scPDB - Distribution of Cavity Similarity values of 5ccc entry / Site 1

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
5ccc	DDF	Dihydrofolate reductase	1.5.1.3

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity
5ccc	DDF	Dihydrofolate reductase	1.5.1.3	1.000
1rx5	DDF	Dihydrofolate reductase	1.5.1.3	0.551
1rf7	DHF	Dihydrofolate reductase	1.5.1.3	0.546
1dds	MTX	Dihydrofolate reductase	1.5.1.3	0.525
1rx7	FOL	Dihydrofolate reductase	1.5.1.3	0.523
4ej1	FOL	Dihydrofolate reductase	1.5.1.3	0.517
4i13	FOL	Dihydrofolate reductase	1.5.1.3	0.515
1dyh	DZF	Dihydrofolate reductase	1.5.1.3	0.513
3clb	NAP	Bifunctional dihydrofolate reductase-thymidylate synthase	1.5.1.3	0.513
3tqa	NDP	Dihydrofolate reductase	/	0.513
3kjs	NAP	Bifunctional dihydrofolate reductase-thymidylate synthase	/	0.512
4cd2	FOL	Dihydrofolate reductase	1.5.1.3	0.511
1re7	FOL	Dihydrofolate reductase	1.5.1.3	0.508
1drb	MTX	Dihydrofolate reductase	1.5.1.3	0.507
1rc4	DDF	Dihydrofolate reductase	1.5.1.3	0.506
5cc9	DDF	Dihydrofolate reductase	1.5.1.3	0.506
1dra	MTX	Dihydrofolate reductase	1.5.1.3	0.505
3inv	NDP	Bifunctional dihydrofolate reductase-thymidylate synthase	1.5.1.3	0.504
1rx8	FOL	Dihydrofolate reductase	1.5.1.3	0.503
2cig	1DG	Dihydrofolate reductase	1.5.1.3	0.503
1ddr	MTX	Dihydrofolate reductase	1.5.1.3	0.501
1rb2	FOL	Dihydrofolate reductase	1.5.1.3	0.500
1rb3	MTX	Dihydrofolate reductase	1.5.1.3	0.500
2h2q	NAP	Bifunctional dihydrofolate reductase-thymidylate synthase	1.5.1.3	0.500
3drc	MTX	Dihydrofolate reductase	1.5.1.3	0.499
3eig	MTX	Dihydrofolate reductase	1.5.1.3	0.499
4dfr	MTX	Dihydrofolate reductase	1.5.1.3	0.497
1tdr	MTX	Dihydrofolate reductase	1.5.1.3	0.493
2drc	MTX	Dihydrofolate reductase	1.5.1.3	0.493
3och	2MX	Dihydrofolate reductase	1.5.1.3	0.492
1dhj	MTX	Dihydrofolate reductase	1.5.1.3	0.491
1dr3	TAP	Dihydrofolate reductase	1.5.1.3	0.491
1jom	FFO	Dihydrofolate reductase	1.5.1.3	0.490
3dga	NDP	Bifunctional dihydrofolate reductase-thymidylate synthase	1.5.1.3	0.490
4i1n	FOL	Dihydrofolate reductase	1.5.1.3	0.490
3qg2	CP6	Bifunctional dihydrofolate reductase-thymidylate synthase	/	0.489
4ele	31I	Dihydrofolate reductase	/	0.488
5hi6	MTX	Dihydrofolate reductase	/	0.488
4x5j	FOL	Dihydrofolate reductase	1.5.1.3	0.487
1dyj	DDF	Dihydrofolate reductase	1.5.1.3	0.486
3qgt	CP6	Bifunctional dihydrofolate reductase-thymidylate synthase	/	0.485
1jol	FFO	Dihydrofolate reductase	1.5.1.3	0.484
3qls	NDP	Dihydrofolate reductase	1.5.1.3	0.483
1ai9	NDP	Dihydrofolate reductase	1.5.1.3	0.477
1dhi	MTX	Dihydrofolate reductase	1.5.1.3	0.471
3qlr	NDP	Dihydrofolate reductase	1.5.1.3	0.471
1rd7	FOL	Dihydrofolate reductase	1.5.1.3	0.470
1og5	SWF	Cytochrome P450 2C9	/	0.467
1dyi	FOL	Dihydrofolate reductase	1.5.1.3	0.466
1ia4	TQ6	Dihydrofolate reductase	1.5.1.3	0.466
2d0k	FOL	Dihydrofolate reductase	1.5.1.3	0.466
2w9s	TOP	Dihydrofolate reductase type 1 from Tn4003	1.5.1.3	0.466
3hbb	NAP	Bifunctional dihydrofolate reductase-thymidylate synthase	1.5.1.3	0.466
1ia3	TQ5	Dihydrofolate reductase	1.5.1.3	0.465
4x5i	FOL	Dihydrofolate reductase	1.5.1.3	0.465
1dr5	NAP	Dihydrofolate reductase	1.5.1.3	0.464
1dr2	TAP	Dihydrofolate reductase	1.5.1.3	0.463
1dg8	NDP	Dihydrofolate reductase	1.5.1.3	0.462
4xe6	06U	Dihydrofolate reductase	1.5.1.3	0.462
3oaf	OAG	Dihydrofolate reductase	1.5.1.3	0.461
3um6	1CY	Bifunctional dihydrofolate reductase-thymidylate synthase	/	0.461
2dhf	DZF	Dihydrofolate reductase	1.5.1.3	0.460
3um5	CP6	Bifunctional dihydrofolate reductase-thymidylate synthase	/	0.459
4elb	34R	Dihydrofolate reductase	/	0.459
1dr3	HBI	Dihydrofolate reductase	1.5.1.3	0.458
1j3j	NDP	Bifunctional dihydrofolate reductase-thymidylate synthase	1.5.1.3	0.457
4o76	1M3	Bromodomain-containing protein 4	/	0.456
5ecc	NAP	Dehydrofolate reductase type I	/	0.456
1diu	BDM	Dihydrofolate reductase	1.5.1.3	0.454
3gwf	FAD	Cyclohexanone monooxygenase	/	0.454
3nxx	NDP	Dihydrofolate reductase	1.5.1.3	0.454
3fl8	RAR	Dihydrofolate reductase	/	0.453
1j3j	CP6	Bifunctional dihydrofolate reductase-thymidylate synthase	1.5.1.3	0.450
3dg8	NDP	Bifunctional dihydrofolate reductase-thymidylate synthase	1.5.1.3	0.450
4h95	06U	Dihydrofolate reductase	1.5.1.3	0.447
1klk	PMD	Dihydrofolate reductase	1.5.1.3	0.446
1qbg	FAD	NAD(P)H dehydrogenase [quinone] 1	1.6.5.2	0.446
4j6d	TES	Cytochrome P450 monooxygenase	/	0.446
2lf1	NDP	Dihydrofolate reductase	1.5.1.3	0.445
3um8	1CY	Bifunctional dihydrofolate reductase-thymidylate synthase	/	0.445
4kne	1CY	Dihydrofolate reductase	1.5.1.3	0.445
1ra8	FOL	Dihydrofolate reductase	1.5.1.3	0.444
1rx6	DDF	Dihydrofolate reductase	1.5.1.3	0.444
4ge7	0K5	Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial	2.6.1.39	0.444
3qfx	CP6	Bifunctional dihydrofolate reductase-thymidylate synthase	1.5.1.3	0.443
4g1z	0VP	Vitamin D3 receptor A	/	0.443
4g95	OAG	Dihydrofolate reductase	1.5.1.3	0.442
1x8l	OXR	Retinol dehydratase	/	0.441
4elg	52J	Dihydrofolate reductase	/	0.441
1rx1	NAP	Dihydrofolate reductase	1.5.1.3	0.440
3eek	53S	Uncharacterized protein	/	0.440