sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4u8k	FDA	UDP-galactopyranose mutase

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
4u8k	FDA	UDP-galactopyranose mutase	/	1.000
3utg	FDA	UDP-galactopyranose mutase	/	0.822
3uth	FDA	UDP-galactopyranose mutase	/	0.773
4wx1	FDA	UDP-galactopyranose mutase	/	0.734
4gde	FDA	UDP-galactopyranose mutase	/	0.611
4u8m	FDA	UDP-galactopyranose mutase	/	0.567
3ukl	FAD	UDP-galactopyranose mutase	/	0.538
5hhf	FDA	UDP-galactopyranose mutase	/	0.527
4u8o	FDA	UDP-galactopyranose mutase	/	0.524
4u8l	FDA	UDP-galactopyranose mutase	/	0.511
3utf	FDA	UDP-galactopyranose mutase	/	0.510
3ukk	FDA	UDP-galactopyranose mutase	/	0.508
4gdd	FAD	UDP-galactopyranose mutase	/	0.503
4u8p	FDA	UDP-galactopyranose mutase	/	0.488
3ukf	FDA	UDP-galactopyranose mutase	/	0.478
4u8j	FDA	UDP-galactopyranose mutase	/	0.454