sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4nce | MGT | Polymerase basic protein 2 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 4nce | MGT | Polymerase basic protein 2 | / | 1.000 | |
| 2vqz | MGT | Polymerase basic protein 2 | / | 0.569 | |
| 4eqk | MGT | Polymerase basic protein 2 | / | 0.563 | |
| 4cb6 | 29R | Polymerase basic protein 2 | / | 0.543 | |
| 4cb4 | MGT | Polymerase basic protein 2 | / | 0.526 | |
| 5fmm | MGT | Polymerase basic protein 2 | / | 0.514 | |
| 4cb5 | 93G | Polymerase basic protein 2 | / | 0.509 | |
| 1u65 | CP0 | Acetylcholinesterase | 3.1.1.7 | 0.489 | |
| 4es5 | MGT | Polymerase basic protein 2 | / | 0.470 | |
| 4cb7 | 41G | Polymerase basic protein 2 | / | 0.467 | |
| 2xuh | TZ4 | Acetylcholinesterase | 3.1.1.7 | 0.456 | |
| 1h22 | E10 | Acetylcholinesterase | 3.1.1.7 | 0.455 | |
| 3zv7 | NHG | Acetylcholinesterase | 3.1.1.7 | 0.454 | |
| 2cek | N8T | Acetylcholinesterase | 3.1.1.7 | 0.449 | |
| 2j3q | TFL | Acetylcholinesterase | 3.1.1.7 | 0.449 | |
| 1bjk | FAD | Ferredoxin--NADP reductase | 1.18.1.2 | 0.446 | |
| 1q84 | TZ4 | Acetylcholinesterase | 3.1.1.7 | 0.446 | |
| 1pqc | 444 | Oxysterols receptor LXR-beta | / | 0.442 | |
| 2w6c | BM4 | Acetylcholinesterase | 3.1.1.7 | 0.441 |