Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4lsmNADGlyceraldehyde-3-phosphate dehydrogenase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4lsmNADGlyceraldehyde-3-phosphate dehydrogenase/1.000
5c7oNADGlyceraldehyde-3-phosphate dehydrogenase, testis-specific1.2.1.120.580
1dc6NADGlyceraldehyde-3-phosphate dehydrogenase A/0.525
1u8fNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.523
3v1yNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.513
3e5rNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.509
1dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.501
1jn0NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.497
1ml3NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.496
4k9dNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.496
1rm5NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.494
4o59NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.494
4z0hNADGlyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic1.2.1.120.491
3l0dNADGlyceraldehyde-3-phosphate dehydrogenase/0.489
4dbvNDPGlyceraldehyde-3-phosphate dehydrogenase/0.489
1ywgNADGlyceraldehyde-3-phosphate dehydrogenase/0.486
3cmcNADGlyceraldehyde-3-phosphate dehydrogenase/0.483
4boyNADGlyceraldehyde-3-phosphate dehydrogenase/0.482
1hdgNADGlyceraldehyde-3-phosphate dehydrogenase/0.481
2dbvNDPGlyceraldehyde-3-phosphate dehydrogenase/0.481
1nboNADGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.478
1vc2NADGlyceraldehyde-3-phosphate dehydrogenase/0.478
4p8rNADGlyceraldehyde-3-phosphate dehydrogenase/0.478
1rm4NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.475
2ep7NADGlyceraldehyde-3-phosphate dehydrogenase/0.473
1gd1NADGlyceraldehyde-3-phosphate dehydrogenase/0.471
3ksdNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.468
1nptNADGlyceraldehyde-3-phosphate dehydrogenase/0.465
1ihxSNDGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.464
3cpsNADGlyceraldehyde-3-phosphate dehydrogenase/0.464
1znqNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.463
3k2bNADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic1.2.1.130.463
3zcxNADGlyceraldehyde-3-phosphate dehydrogenase/0.463
2vynNADGlyceraldehyde-3-phosphate dehydrogenase A/0.462
1szjNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.460
1a7kNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.458
3lvfNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.458
1gadNADGlyceraldehyde-3-phosphate dehydrogenase A/0.455
3l4sNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.454
1rm3NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.448
3gnqNADGlyceraldehyde-3-phosphate dehydrogenase/0.448
3idsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.448
1ihyAPRGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.446
4o63NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.442