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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4d9wX32Thermolysin3.4.24.27

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4d9wX32Thermolysin3.4.24.271.000
3t87UBZThermolysin3.4.24.270.896
3t8cUBWThermolysin3.4.24.270.875
3t8dUBVThermolysin3.4.24.270.658
3t74UBYThermolysin3.4.24.270.649
2tmn0FAThermolysin3.4.24.270.648
6tmn0PIThermolysin3.4.24.270.647
1qf2TI3Thermolysin3.4.24.270.645
4h570PJThermolysin3.4.24.270.633
3t8hUBSThermolysin3.4.24.270.628
4tmn0PKThermolysin3.4.24.270.618
4tlnLNOThermolysin3.4.24.270.609
3fgdBYAThermolysin3.4.24.270.605
3forZNPThermolysin3.4.24.270.584
3f28S7BThermolysin3.4.24.270.491
3f2pS3BThermolysin3.4.24.270.470
4araC56Acetylcholinesterase3.1.1.70.461
3hyoADPPyridoxal kinase/0.460
4qaiFMNNADPH dehydrogenase/0.451
2q2vNADBeta-D-hydroxybutyrate dehydrogenase/0.444
4eywL0RCarnitine O-palmitoyltransferase 2, mitochondrial2.3.1.210.444
4zr5RDFNeprilysin/0.444
3keuATPPyridoxal kinase2.7.1.350.443
3w8eNAD3-hydroxybutyrate dehydrogenase/0.443
3fhyATPPyridoxal kinase2.7.1.350.442
1q84TZ4Acetylcholinesterase3.1.1.70.441
2ztlNADD(-)-3-hydroxybutyrate dehydrogenase/0.440