1.930 Å
X-ray
2008-12-31
Min | Mean | Median | Standard Deviation | Max | Count | |
---|---|---|---|---|---|---|
pChEMBL: | 5.120 | 5.120 | 5.120 | 0.000 | 5.120 | 1 |
Name: | Thermolysin |
---|---|
ID: | THER_BACTH |
AC: | P00800 |
Organism: | Bacillus thermoproteolyticus |
Reign: | Bacteria |
TaxID: | 1427 |
EC Number: | 3.4.24.27 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 17.527 |
---|---|
Number of residues: | 26 |
Including | |
Standard Amino Acids: | 24 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | |
Metals: | ZN |
Ligandability | Volume (Å3) |
---|---|
0.287 | 408.375 |
% Hydrophobic | % Polar |
---|---|
45.45 | 54.55 |
According to VolSite |
HET Code: | ZNP |
---|---|
Formula: | C10H12N2O3 |
Molecular weight: | 208.214 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 56.87 % |
Polar Surface area: | 88.91 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 1 |
Rings: | 1 |
Aromatic rings: | 1 |
Anionic atoms: | 1 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
-9.6564 | -39.3821 | -3.43307 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
OAO | ND2 | ASN- 112 | 3.01 | 162.27 | H-Bond (Protein Donor) |
CAJ | CD2 | LEU- 133 | 4.23 | 0 | Hydrophobic |
CAH | CG2 | VAL- 139 | 3.38 | 0 | Hydrophobic |
CAG | CB | HIS- 142 | 4.17 | 0 | Hydrophobic |
CAH | CG2 | ILE- 188 | 3.89 | 0 | Hydrophobic |
CAJ | CD2 | LEU- 202 | 3.44 | 0 | Hydrophobic |
NAK | ZN | ZN- 805 | 2.77 | 0 | Metal Acceptor |
OAN | ZN | ZN- 805 | 2.25 | 0 | Metal Acceptor |
OAM | ZN | ZN- 805 | 2.63 | 0 | Metal Acceptor |