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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3x025GPPhosphatidylinositol 5-phosphate 4-kinase type-2 beta2.7.1.149

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3x025GPPhosphatidylinositol 5-phosphate 4-kinase type-2 beta2.7.1.1491.000
3x0c5GPPhosphatidylinositol 5-phosphate 4-kinase type-2 beta2.7.1.1490.608
3x0a5GPPhosphatidylinositol 5-phosphate 4-kinase type-2 beta2.7.1.1490.569
3x065GPPhosphatidylinositol 5-phosphate 4-kinase type-2 beta2.7.1.1490.559
3x04GNPPhosphatidylinositol 5-phosphate 4-kinase type-2 beta2.7.1.1490.556
3x03ANPPhosphatidylinositol 5-phosphate 4-kinase type-2 beta2.7.1.1490.460