2.700 Å
X-ray
2014-10-09
Name: | Phosphatidylinositol 5-phosphate 4-kinase type-2 beta |
---|---|
ID: | PI42B_HUMAN |
AC: | P78356 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.7.1.149 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 78.153 |
---|---|
Number of residues: | 19 |
Including | |
Standard Amino Acids: | 19 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.299 | 509.625 |
% Hydrophobic | % Polar |
---|---|
52.32 | 47.68 |
According to VolSite |
HET Code: | ANP |
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Formula: | C10H13N6O12P3 |
Molecular weight: | 502.164 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 38.31 % |
Polar Surface area: | 322.68 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 16 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
44.35 | 61.5951 | -5.23184 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C2' | CZ | PHE- 139 | 4.03 | 0 | Hydrophobic |
C1' | CE2 | PHE- 139 | 3.26 | 0 | Hydrophobic |
N6 | O | ARG- 202 | 3.11 | 138.34 | H-Bond (Ligand Donor) |
N1 | N | VAL- 204 | 2.9 | 178.24 | H-Bond (Protein Donor) |
O3' | NZ | LYS- 214 | 2.66 | 157.74 | H-Bond (Protein Donor) |
O2' | NZ | LYS- 214 | 3.26 | 120.56 | H-Bond (Protein Donor) |
C2' | CD2 | LEU- 282 | 3.9 | 0 | Hydrophobic |
C4' | CD1 | ILE- 368 | 4.46 | 0 | Hydrophobic |