sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3wgn | GSP | Cell division protein FtsZ |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 3wgn | GSP | Cell division protein FtsZ | / | 1.000 | |
| 3vo8 | GDP | Cell division protein FtsZ | / | 0.588 | |
| 3h3s | H15 | Collagen type IV alpha-3-binding protein | / | 0.469 | |
| 3opx | U5P | Suppressor of disruption of TFIIS | / | 0.467 | |
| 1x1c | SAH | C-20 methyltransferase | / | 0.464 | |
| 1q5m | NDP | Prostaglandin-E(2) 9-reductase | 1.1.1.189 | 0.461 | |
| 3iwk | NAD | Aminoaldehyde dehydrogenase | / | 0.457 | |
| 1pq9 | 44B | Oxysterols receptor LXR-beta | / | 0.455 | |
| 3qi4 | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.455 | |
| 2b4q | NAP | Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase | 1.1.1.100 | 0.454 | |
| 1dli | UDX | UDP-glucose 6-dehydrogenase | / | 0.453 | |
| 4e90 | 7RG | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.448 | |
| 4pt0 | NAD | Aldehyde dehydrogenase | / | 0.446 | |
| 4a86 | H35 | Major pollen allergen Bet v 1-A | / | 0.444 | |
| 3h3t | 16H | Collagen type IV alpha-3-binding protein | / | 0.442 | |
| 3k3h | BYE | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.440 |