Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3we0FADLysine 2-monooxygenase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3we0FADLysine 2-monooxygenase/1.000
3kveFADL-amino-acid oxidase/0.517
1f8rFADL-amino-acid oxidase1.4.3.20.516
1f8sFADL-amino-acid oxidase1.4.3.20.488
2babFADPutative aminooxidase/0.484
2e1mFADL-glutamate oxidase/0.480
5g3tFDAFlavin-dependent L-tryptophan oxidase VioA/0.472
4fwjFADLysine-specific histone demethylase 1B10.469
3bi2FADPolyamine oxidase FMS1/0.468
2yg5FADPutrescine oxidase/0.467
3kpfFADPolyamine oxidase1.5.3.140.465
2b9yFADPutative aminooxidase/0.464
2ba9FADPutative aminooxidase/0.464
3cn8FADPolyamine oxidase FMS1/0.464
2yg4FADPutrescine oxidase/0.461
2uxxFAJLysine-specific histone demethylase 1A10.456
4echFADPolyamine oxidase FMS1/0.456
3cntFADPolyamine oxidase FMS1/0.455
2jaeFADL-amino acid oxidase/0.453
1h83FADPolyamine oxidase1.5.3.140.452
3bi5FADPolyamine oxidase FMS1/0.446
2hkoFADLysine-specific histone demethylase 1A10.445
1xpqFADPolyamine oxidase FMS1/0.443
3k7mFAD6-hydroxy-L-nicotine oxidase/0.440
3k7tFAD6-hydroxy-L-nicotine oxidase/0.440