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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3rbaCODPhosphopantetheine adenylyltransferase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3rbaCODPhosphopantetheine adenylyltransferase/1.000
3lcjCOAPhosphopantetheine adenylyltransferase/0.564
3nd6ATPPhosphopantetheine adenylyltransferase/0.497
4nauAGSPhosphopantetheine adenylyltransferase/0.489
2pidYSATyrosine--tRNA ligase, mitochondrial6.1.1.10.467
3isjA8DPantothenate synthetase6.3.2.10.466
5kwvANPPantothenate synthetase/0.463
3fr5I4AFatty acid-binding protein, adipocyte/0.462
1h6cNDPGlucose--fructose oxidoreductase1.1.99.280.460
3iocA5DPantothenate synthetase6.3.2.10.454
3coy53HPantothenate synthetase6.3.2.10.453
1nm5NAPNAD(P) transhydrogenase subunit beta1.6.1.20.452
3to3ATPPetrobactin biosynthesis protein AsbB/0.450
1n2hPAJPantothenate synthetase6.3.2.10.448
1nuuNADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.445
1o9bNAIQuinate/shikimate dehydrogenase/0.444
1nupNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.442