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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3qbjNXZDipeptidyl peptidase 4

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3qbjNXZDipeptidyl peptidase 4/1.000
3vjlW94Dipeptidyl peptidase 4/0.571
3vjkM51Dipeptidyl peptidase 4/0.564
3f8sPF2Dipeptidyl peptidase 4/0.562
3ccc7ACDipeptidyl peptidase 4/0.559
3opmLUIDipeptidyl peptidase 4/0.557
3ccbB2YDipeptidyl peptidase 4/0.539
4g1f0WGDipeptidyl peptidase 4/0.538
4ffw715Dipeptidyl peptidase 4/0.531
3g0bT22Dipeptidyl peptidase 4/0.530
2rgu356Dipeptidyl peptidase 4/0.500
2aj8SC3Dipeptidyl peptidase 4/0.498
3g0dXIHDipeptidyl peptidase 4/0.488
3g0gRUMDipeptidyl peptidase 4/0.486
2oaeAILDipeptidyl peptidase 4/0.481
3hdyGDUUDP-galactopyranose mutase/0.471
3nubUD0UDP-2-acetamido-2-deoxy-3-oxo-D-glucuronate aminotransferase2.6.1.980.471
1x1bSAHC-20 methyltransferase/0.453
3qgf46FGenome polyprotein2.7.7.480.453
2iibC5PAlpha-2,3/2,6-sialyltransferase/sialidase/0.452
4hmz18TdTDP-4-dehydro-6-deoxyglucose 3-epimerase5.1.3.270.451
3gfbNADL-threonine 3-dehydrogenase/0.447
2xugTZ4Acetylcholinesterase3.1.1.70.446