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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3maaFKPAdenylate cyclase type 2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3maaFKPAdenylate cyclase type 2/1.000
3maaFKPAdenylate cyclase type 5/1.000
1cjkFOKAdenylate cyclase type 2/0.614
1cjkFOKAdenylate cyclase type 5/0.614
1cjvFOKAdenylate cyclase type 2/0.607
1cjvFOKAdenylate cyclase type 5/0.607
1cjtFOKAdenylate cyclase type 2/0.586
1cjtFOKAdenylate cyclase type 5/0.586
1cs4FOKAdenylate cyclase type 2/0.581
1cs4FOKAdenylate cyclase type 5/0.581
1culFOKAdenylate cyclase type 2/0.579
1culFOKAdenylate cyclase type 5/0.579
2gvdFKPAdenylate cyclase type 2/0.576
2gvdFKPAdenylate cyclase type 5/0.576
1cjuFOKAdenylate cyclase type 2/0.575
1cjuFOKAdenylate cyclase type 5/0.575
1u0hFOKAdenylate cyclase type 2/0.567
1u0hFOKAdenylate cyclase type 5/0.567
1tl7FOKAdenylate cyclase type 2/0.563
1tl7FOKAdenylate cyclase type 5/0.563
3c15FOKAdenylate cyclase type 2/0.556
3c15FOKAdenylate cyclase type 5/0.556
3c16FOKAdenylate cyclase type 2/0.530
3c16FOKAdenylate cyclase type 5/0.530