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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3jzfJZKBiotin carboxylase6.3.4.14

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3jzfJZKBiotin carboxylase6.3.4.141.000
2v5aLZLBiotin carboxylase6.3.4.140.519
3jziJZLBiotin carboxylase6.3.4.140.478
4mv8ACPBiotin carboxylase6.3.4.140.472
2v58LZJBiotin carboxylase6.3.4.140.460
2v59LZKBiotin carboxylase6.3.4.140.459