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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3idsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.12

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3idsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.121.000
4p8rNADGlyceraldehyde-3-phosphate dehydrogenase/0.616
3dmtNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.615
1qxsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.550
1ml3NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.543
4o59NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.536
3e5rNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.527
4k9dNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.525
1u8fNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.524
3ksdNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.517
1gadNADGlyceraldehyde-3-phosphate dehydrogenase A/0.516
3pymNADGlyceraldehyde-3-phosphate dehydrogenase 31.2.1.120.516
1znqNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.503
1a7kNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.496
3cpsNADGlyceraldehyde-3-phosphate dehydrogenase/0.486
2vynNADGlyceraldehyde-3-phosphate dehydrogenase A/0.474
1nptNADGlyceraldehyde-3-phosphate dehydrogenase/0.471
2vyvNADGlyceraldehyde-3-phosphate dehydrogenase A/0.469
1gd1NADGlyceraldehyde-3-phosphate dehydrogenase/0.468
1gypNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.467
1nboNADGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.467
3dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.467
4z0hNADGlyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic1.2.1.120.465
3cifNADGlyceraldehyde-3-phosphate dehydrogenase/0.463
3cmcNADGlyceraldehyde-3-phosphate dehydrogenase/0.463
3hjaNADGlyceraldehyde-3-phosphate dehydrogenase/0.461
3docNADGlyceraldehyde-3-phosphate dehydrogenase/0.459
1vsvNADGlyceraldehyde-3-phosphate dehydrogenase/0.458
1dc6NADGlyceraldehyde-3-phosphate dehydrogenase A/0.455
1rm4NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.455
1rm5NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.454
3k2bNADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic1.2.1.130.453
3l4sNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.452
3v1yNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.451
1dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.445
1nqaNADGlyceraldehyde-3-phosphate dehydrogenase/0.443
3b20NADGlyceraldehyde-3-phosphate dehydrogenase/0.443
1rm3NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.440