sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3h0a | 9RA | Retinoic acid receptor RXR-alpha |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 3h0a | 9RA | Retinoic acid receptor RXR-alpha | / | 1.000 | |
| 1uhl | MEI | Retinoic acid receptor RXR-beta | / | 0.522 | |
| 2qd4 | CHD | Ferrochelatase, mitochondrial | 4.99.1.1 | 0.500 | |
| 1k74 | 9CR | Retinoic acid receptor RXR-alpha | / | 0.486 | |
| 4k4j | 1O8 | Retinoic acid receptor RXR-alpha | / | 0.476 | |
| 2acl | REA | Retinoic acid receptor RXR-alpha | / | 0.472 | |
| 1rdt | L79 | Retinoic acid receptor RXR-alpha | / | 0.471 | |
| 1jip | KTN | 6-deoxyerythronolide B hydroxylase | / | 0.466 | |
| 1dxo | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.465 | |
| 3qlr | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.463 | |
| 1pkf | EPD | Epothilone C/D epoxidase | 1.14 | 0.461 | |
| 1q5d | EPB | Epothilone C/D epoxidase | 1.14 | 0.459 | |
| 1fdu | EST | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.458 | |
| 3hcr | CHD | Ferrochelatase, mitochondrial | 4.99.1.1 | 0.458 | |
| 4trn | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.458 | |
| 2xvv | 9DN | Serum albumin | / | 0.457 | |
| 3fu8 | 3DM | Laccase-1 | 1.10.3.2 | 0.457 | |
| 4jbt | ASD | Cytochrome P450 monooxygenase | / | 0.457 | |
| 1wsv | THH | Aminomethyltransferase, mitochondrial | / | 0.456 | |
| 3d5f | L41 | Peroxisome proliferator-activated receptor delta | / | 0.455 | |
| 3mdm | FJZ | Cholesterol 24-hydroxylase | / | 0.454 | |
| 1dhf | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.453 | |
| 2yiu | SMA | Cytochrome b | / | 0.453 | |
| 3lqf | NAD | Galactitol dehydrogenase | / | 0.453 | |
| 3mdv | CL6 | Cholesterol 24-hydroxylase | / | 0.453 | |
| 3qm4 | PN0 | Cytochrome P450 2D6 | / | 0.453 | |
| 1geb | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.452 | |
| 1lco | PPY | Cytochrome b2, mitochondrial | 1.1.2.3 | 0.452 | |
| 3bfb | 9OD | Pheromone-binding protein ASP1 | / | 0.452 | |
| 3th8 | TH9 | Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) | 2.5.1.31 | 0.452 | |
| 3w1w | CHD | Ferrochelatase, mitochondrial | 4.99.1.1 | 0.452 | |
| 1og5 | SWF | Cytochrome P450 2C9 | / | 0.451 | |
| 2hqp | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.451 | |
| 2cpp | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.450 | |
| 2h2q | NAP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.450 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.450 | |
| 5bn3 | ADP | NEQ263 | / | 0.450 | |
| 1phg | MYT | Camphor 5-monooxygenase | 1.14.15.1 | 0.449 | |
| 1t87 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.449 | |
| 1xiu | REA | Retinoic acid receptor RXR | / | 0.449 | |
| 2acw | UPG | Glycosyltransferase | / | 0.449 | |
| 3fwi | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.449 | |
| 6cp4 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.449 | |
| 1nde | MON | Estrogen receptor beta | / | 0.448 | |
| 2wpw | ACO | Orf14 | / | 0.448 | |
| 2gr1 | FAD | Ferredoxin reductase | / | 0.447 | |
| 3klj | FAD | NADH-rubredoxin oxidoreductase | 1.18.1.1 | 0.447 | |
| 1fm9 | 9CR | Retinoic acid receptor RXR-alpha | / | 0.446 | |
| 1fmj | RTL | Retinol dehydratase | / | 0.446 | |
| 1fp2 | HMO | Isoflavone-7-O-methyltransferase 8 | 2.1.1.150 | 0.446 | |
| 3p99 | LNP | Lanosterol 14-alpha-demethylase | / | 0.446 | |
| 1fm4 | DXC | Major pollen allergen Bet v 1-L | / | 0.444 | |
| 2y98 | MIV | Mycinamicin IV hydroxylase/epoxidase | / | 0.444 | |
| 2ze2 | T27 | Gag-Pol polyprotein | 2.7.7.49 | 0.444 | |
| 2znn | S44 | Peroxisome proliferator-activated receptor alpha | / | 0.444 | |
| 3oez | STI | Proto-oncogene tyrosine-protein kinase Src | 2.7.10.2 | 0.444 | |
| 4iui | 1GQ | Estrogen receptor | / | 0.444 | |
| 4zju | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | / | 0.444 | |
| 1e7a | PFL | Serum albumin | / | 0.443 | |
| 1iwj | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.443 | |
| 2ay9 | 5PV | Aromatic-amino-acid aminotransferase | 2.6.1.57 | 0.443 | |
| 2uxo | TAC | HTH-type transcriptional regulator TtgR | / | 0.443 | |
| 3fal | REA | Retinoic acid receptor RXR-alpha | / | 0.443 | |
| 3fgo | CZA | Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 | 3.6.3.8 | 0.443 | |
| 4dre | NAI | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.443 | |
| 1dz8 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.442 | |
| 1eio | GCH | Gastrotropin | / | 0.442 | |
| 1t88 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.442 | |
| 4r20 | AER | Cytochrome P450 family 17 polypeptide 2 | / | 0.442 | |
| 3uzc | T4E | Adenosine receptor A2a | / | 0.442 | |
| 1xuo | LA1 | Integrin alpha-L | / | 0.441 | |
| 2i4p | DRH | Peroxisome proliferator-activated receptor gamma | / | 0.441 | |
| 2uxu | NAR | HTH-type transcriptional regulator TtgR | / | 0.441 | |
| 2xvw | 9NR | Serum albumin | / | 0.441 | |
| 3oey | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.441 | |
| 4a83 | DXC | Major pollen allergen Bet v 1-A | / | 0.441 | |
| 4jqh | 1MF | Alr2278 protein | / | 0.441 | |
| 4l4c | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.441 | |
| 2aqh | NAI | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.440 | |
| 2jn3 | JN3 | Fatty acid-binding protein, liver | / | 0.440 | |
| 2mjp | ANP | dITP/XTP pyrophosphatase | 3.6.1.19 | 0.440 | |
| 3aba | FLI | Cytochrome P450 | / | 0.440 | |
| 3ans | S38 | Bifunctional epoxide hydrolase 2 | 3.3.2.10 | 0.440 | |
| 3cpp | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.440 | |
| 3vt7 | VDX | Vitamin D3 receptor | / | 0.440 | |
| 4apu | A2K | Progesterone receptor | / | 0.440 | |
| 4eji | 0QA | Cytochrome P450 2A13 | 1.14.14.1 | 0.440 | |
| 4euf | NAD | Trans-2-enoyl-CoA reductase [NADH] | / | 0.440 | |
| 4j6c | STR | Cytochrome P450 monooxygenase | / | 0.440 | |
| 5d7p | OCZ | NAD-dependent protein deacetylase sirtuin-2 | 3.5.1 | 0.440 | |
| 3pwh | ZMA | Adenosine receptor A2a | / | 0.440 | |
| 3uza | T4G | Adenosine receptor A2a | / | 0.440 |