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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3fo7IMNPhospholipase A2 VRV-PL-VIIIa

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3fo7IMNPhospholipase A2 VRV-PL-VIIIa/1.000
2oliIOPBasic phospholipase A2 VRV-PL-VIIIa3.1.1.40.589
2othNIMBasic phospholipase A2 VRV-PL-VIIIa3.1.1.40.562
1skgVAL_ALA_PHE_ARG_SERBasic phospholipase A2 VRV-PL-VIIIa3.1.1.40.535
4qemHC4Phospholipase A2 VRV-PL-VIIIa/0.535
2oyfIACBasic phospholipase A2 VRV-PL-VIIIa3.1.1.40.511
4qerSTLPhospholipase A2 VRV-PL-VIIIa/0.509
5p2pDHGPhospholipase A2, major isoenzyme3.1.1.40.507
2pwsIBPBasic phospholipase A2 VRV-PL-VIIIa3.1.1.40.480
1y4lSVRBasic phospholipase A2 homolog 2/0.473
4hmbPZZPhospholipase A2 VRV-PL-VIIIa/0.461
4qf7C0RPhospholipase A2 VRV-PL-VIIIa/0.461
1th6OINBasic phospholipase A2 VRV-PL-VIIIa3.1.1.40.458
2qvdBERBasic phospholipase A2 VRV-PL-VIIIa3.1.1.40.458
1pkfEPDEpothilone C/D epoxidase1.140.453
1dgbNDPCatalase1.11.1.60.450
3tm5SFGUncharacterized protein/0.449
2qhwPZZBasic phospholipase A2 VRV-PL-VIIIa3.1.1.40.447
4eixNIMPhospholipase A2 VRV-PL-VIIIa/0.447
3pblETQD(3) dopamine receptor/0.446
3u8dU8DPhospholipase A2, membrane associated/0.441