2.210 Å
X-ray
2012-10-18
| Name: | Phospholipase A2 VRV-PL-VIIIa |
|---|---|
| ID: | D0VX11_9SAUR |
| AC: | D0VX11 |
| Organism: | Daboia russellii pulchella |
| Reign: | Eukaryota |
| TaxID: | 97228 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 31.726 |
|---|---|
| Number of residues: | 21 |
| Including | |
| Standard Amino Acids: | 21 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.350 | 391.500 |
| % Hydrophobic | % Polar |
|---|---|
| 56.03 | 43.97 |
| According to VolSite | |

| HET Code: | PZZ |
|---|---|
| Formula: | C14H21N2O |
| Molecular weight: | 233.329 g/mol |
| DrugBank ID: | DB08447 |
| Buried Surface Area: | 43.81 % |
| Polar Surface area: | 40.46 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 1 |
| H-Bond Donors: | 3 |
| Rings: | 2 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 5 |
| X | Y | Z |
|---|---|---|
| 22.2778 | 6.14294 | 7.40624 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C8 | CG | LEU- 2 | 4.33 | 0 | Hydrophobic |
| C4 | CD1 | LEU- 2 | 4.15 | 0 | Hydrophobic |
| C16 | CE2 | PHE- 5 | 3.9 | 0 | Hydrophobic |
| C5 | CB | ALA- 18 | 4.12 | 0 | Hydrophobic |
| C4 | CG1 | ILE- 19 | 4.29 | 0 | Hydrophobic |
| C8 | CB | SER- 23 | 4.24 | 0 | Hydrophobic |
| C15 | CB | CYS- 29 | 4.5 | 0 | Hydrophobic |
| C16 | SG | CYS- 45 | 4.04 | 0 | Hydrophobic |
| C16 | CB | HIS- 48 | 4.45 | 0 | Hydrophobic |
| O17 | ND1 | HIS- 48 | 3.12 | 145.65 | H-Bond (Ligand Donor) |