1.200 Å
X-ray
2014-05-18
| Name: | Phospholipase A2 VRV-PL-VIIIa |
|---|---|
| ID: | D0VX11_9SAUR |
| AC: | D0VX11 |
| Organism: | Daboia russellii pulchella |
| Reign: | Eukaryota |
| TaxID: | 97228 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 14.834 |
|---|---|
| Number of residues: | 26 |
| Including | |
| Standard Amino Acids: | 26 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.766 | 432.000 |
| % Hydrophobic | % Polar |
|---|---|
| 58.59 | 41.41 |
| According to VolSite | |

| HET Code: | STL |
|---|---|
| Formula: | C14H12O3 |
| Molecular weight: | 228.243 g/mol |
| DrugBank ID: | DB02709 |
| Buried Surface Area: | 57.11 % |
| Polar Surface area: | 60.69 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 3 |
| H-Bond Donors: | 3 |
| Rings: | 2 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 2 |
| X | Y | Z |
|---|---|---|
| -5.84753 | 22.0196 | 5.27318 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C1 | CB | LEU- 2 | 4.48 | 0 | Hydrophobic |
| C5 | CD2 | LEU- 2 | 4.11 | 0 | Hydrophobic |
| C3 | CD1 | LEU- 2 | 3.36 | 0 | Hydrophobic |
| C10 | CE2 | PHE- 5 | 3.28 | 0 | Hydrophobic |
| C6 | CB | ALA- 18 | 4.4 | 0 | Hydrophobic |
| C2 | CD1 | ILE- 19 | 3.56 | 0 | Hydrophobic |
| C11 | SG | CYS- 45 | 3.65 | 0 | Hydrophobic |
| C12 | CB | HIS- 48 | 4.38 | 0 | Hydrophobic |
| O1 | OD1 | ASP- 49 | 2.84 | 174.6 | H-Bond (Ligand Donor) |