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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3d0bSNXHeat shock protein HSP 90-alpha

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3d0bSNXHeat shock protein HSP 90-alpha/1.000
4nh82LCHeat shock protein HSP 90-alpha/0.665
1uymPU3Heat shock protein HSP 90-beta/0.657
3inxJZCHeat shock protein HSP 90-alpha/0.641
1uy9PU6Heat shock protein HSP 90-alpha/0.640
2yeiXQIHeat shock protein HSP 90-alpha/0.639
2fwyH64Heat shock protein HSP 90-alpha/0.629
2yee2ECHeat shock protein HSP 90-alpha/0.612
4hy6FJ1Heat shock protein HSP 90-alpha/0.612
1uyePU9Heat shock protein HSP 90-alpha/0.609
3o0iP54Heat shock protein HSP 90-alpha/0.609
1uykPUXHeat shock protein HSP 90-alpha/0.606
1uy8PU5Heat shock protein HSP 90-alpha/0.603
4efuEFUHeat shock protein HSP 90-alpha/0.603
2fwzH71Heat shock protein HSP 90-alpha/0.596
2wi4ZZ4Heat shock protein HSP 90-alpha/0.585
3hz142CHeat shock protein HSP 90-alpha/0.584
1uy7PU4Heat shock protein HSP 90-alpha/0.582
3hz5Z64Heat shock protein HSP 90-alpha/0.582
2yk2YJXHeat shock protein HSP 90-alpha/0.581
2yejXQKHeat shock protein HSP 90-alpha/0.580
3hz137DHeat shock protein HSP 90-alpha/0.578
2yejZZ3Heat shock protein HSP 90-alpha/0.576
1uyfPU1Heat shock protein HSP 90-alpha/0.575
3ft8MOJHeat shock protein HSP 90-alpha/0.571
3mnrSD1Heat shock protein HSP 90-alpha/0.571
2ykiYKIHeat shock protein HSP 90-alpha/0.567
4bqg50QHeat shock protein HSP 90-alpha/0.563
2qg2A91Heat shock protein HSP 90-alpha/0.562
2yjxYJXHeat shock protein HSP 90-alpha/0.562
2ykeYKEHeat shock protein HSP 90-alpha/0.562
2yk2YJWHeat shock protein HSP 90-alpha/0.560
2h55DZ8Heat shock protein HSP 90-alpha/0.558
1uycPU7Heat shock protein HSP 90-alpha/0.554
1uydPU8Heat shock protein HSP 90-alpha/0.552
2ykjYKJHeat shock protein HSP 90-alpha/0.550
3o6o94MHeat shock protein 83/0.550
3qdd94MHeat shock protein HSP 90-alpha/0.548
1uyhPU0Heat shock protein HSP 90-alpha/0.547
2ykcYKCHeat shock protein HSP 90-alpha/0.545
3inwJZBHeat shock protein HSP 90-alpha/0.545
2wi72KLHeat shock protein HSP 90-alpha/0.544
1uyiPUZHeat shock protein HSP 90-alpha/0.539
3k974CDHeat shock protein HSP 90-alpha/0.533
1uy6PU3Heat shock protein HSP 90-alpha/0.528
4awq592Heat shock protein HSP 90-alpha/0.526
3hyz42CHeat shock protein HSP 90-alpha/0.516
3q5kD1UHeat shock protein 83-1/0.507
2ykbYKBHeat shock protein HSP 90-alpha/0.504
3opdHIEHeat shock protein 83/0.503
4awp99AHeat shock protein HSP 90-alpha/0.499
4awo99BHeat shock protein HSP 90-alpha/0.492
2xhrC0PHeat shock protein HSP 90-alpha/0.484
2bt0CT5Heat shock protein HSP 90-alpha/0.480
1yc14BCHeat shock protein HSP 90-alpha/0.469
2qg0A94Heat shock protein HSP 90-alpha/0.469
1yc443PHeat shock protein HSP 90-alpha/0.464
1yetGDMHeat shock protein HSP 90-alpha/0.458
4xclAGSHeat shock cognate 90 kDa protein/0.458
2xjjL81Heat shock protein HSP 90-alpha/0.455
2yegXQGHeat shock protein HSP 90-alpha/0.448
2xabVHDHeat shock protein HSP 90-alpha/0.444
3vhaVHAHeat shock protein HSP 90-alpha/0.443
4jqlVJ6Heat shock protein HSP 90-alpha/0.443
1yc34BCHeat shock protein HSP 90-alpha/0.442
4eftEFTHeat shock protein HSP 90-alpha/0.441