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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2yvfFADFerredoxin reductase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2yvfFADFerredoxin reductase/1.000
4burFADApoptosis-inducing factor 1, mitochondrial1.1.10.494
3imgBZ3Pantothenate synthetase6.3.2.10.471
3imeBZ2Pantothenate synthetase6.3.2.10.463
3imgBZ2Pantothenate synthetase6.3.2.10.459
3fg2FADPutative rubredoxin reductase/0.451
5cwa0GAAnthranilate synthase component 14.1.3.270.441