sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2uv0 | OHN | Transcriptional activator protein LasR |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 2uv0 | OHN | Transcriptional activator protein LasR | / | 1.000 | |
| 3ix3 | OHN | Transcriptional activator protein LasR | / | 0.617 | |
| 3ix8 | TX3 | Transcriptional activator protein LasR | / | 0.579 | |
| 3ix4 | TX1 | Transcriptional activator protein LasR | / | 0.575 | |
| 3jpu | TY4 | Transcriptional activator protein LasR | / | 0.572 | |
| 4ng2 | OHN | Transcriptional activator protein LasR | / | 0.556 | |
| 1bwk | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.470 | |
| 1oyc | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.468 | |
| 4tmc | FMN | Old yellow enzyme | / | 0.464 | |
| 2xi4 | AFT | Acetylcholinesterase | 3.1.1.7 | 0.461 | |
| 1jf0 | CZH | Obelin | / | 0.460 | |
| 4ceq | QCH | Integrase | / | 0.458 | |
| 4n1g | CEI | Obelin | / | 0.456 | |
| 3f03 | FMN | Pentaerythritol tetranitrate reductase | / | 0.453 | |
| 3ak4 | NAD | NADH-dependent quinuclidinone reductase | / | 0.452 | |
| 4g2j | 0WF | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.451 | |
| 1kbj | FMN | Cytochrome b2, mitochondrial | 1.1.2.3 | 0.450 | |
| 1ppl | 1Z7 | Penicillopepsin-1 | 3.4.23.20 | 0.450 | |
| 1qti | GNT | Acetylcholinesterase | 3.1.1.7 | 0.450 | |
| 2a0w | DIH | Purine nucleoside phosphorylase | 2.4.2.1 | 0.450 | |
| 2ivn | ANP | tRNA N6-adenosine threonylcarbamoyltransferase | / | 0.449 | |
| 4xba | 5GP | Aprataxin-like protein | 3 | 0.449 | |
| 1bwl | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.448 | |
| 2cjp | VPR | Epoxide hydrolase | / | 0.448 | |
| 3gey | P34 | Poly [ADP-ribose] polymerase 15 | 2.4.2.30 | 0.448 | |
| 3ddw | 055 | Glycogen phosphorylase, liver form | 2.4.1.1 | 0.447 | |
| 3cuk | FAD | D-amino-acid oxidase | 1.4.3.3 | 0.446 | |
| 3img | BZ2 | Pantothenate synthetase | 6.3.2.1 | 0.446 | |
| 1bxo | PP7 | Penicillopepsin-1 | 3.4.23.20 | 0.445 | |
| 1uhh | CZP | Aequorin-2 | / | 0.445 | |
| 2p83 | MR0 | Beta-secretase 1 | 3.4.23.46 | 0.445 | |
| 3e8x | NAP | BH1520 protein | / | 0.445 | |
| 3nju | ANN | Acidic phospholipase A2 3 | 3.1.1.4 | 0.445 | |
| 1j49 | NAD | D-lactate dehydrogenase | 1.1.1.28 | 0.444 | |
| 1rft | PXM | Pyridoxal kinase | 2.7.1.35 | 0.444 | |
| 3img | BZ3 | Pantothenate synthetase | 6.3.2.1 | 0.444 | |
| 4itf | TFY | Vitamin D3 receptor | / | 0.444 | |
| 2abb | FMN | Pentaerythritol tetranitrate reductase | / | 0.443 | |
| 4a31 | MYA | Glycylpeptide N-tetradecanoyltransferase | / | 0.443 | |
| 4g67 | SAH | Uncharacterized ACR, COG1565 superfamily | / | 0.443 | |
| 2xvu | 9DN | Serum albumin | / | 0.442 | |
| 3g1r | NAP | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.442 | |
| 3f6s | FMN | Flavodoxin | / | 0.441 | |
| 3ggs | 2FD | Purine nucleoside phosphorylase | 2.4.2.1 | 0.441 | |
| 3ime | BZ2 | Pantothenate synthetase | 6.3.2.1 | 0.441 | |
| 2web | PP4 | Penicillopepsin-1 | 3.4.23.20 | 0.440 | |
| 4h2w | 5GP | Amino acid--[acyl-carrier-protein] ligase 1 | 6.2.1.n2 | 0.440 |