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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2pvjP44Casein kinase II subunit alpha2.7.11.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2pvjP44Casein kinase II subunit alpha2.7.11.11.000
2pvlP55Casein kinase II subunit alpha2.7.11.10.607
2pvmP29Casein kinase II subunit alpha2.7.11.10.543
3be9P04Casein kinase II subunit alpha2.7.11.10.527
2pvnP63Casein kinase II subunit alpha2.7.11.10.514
4dgmAGICasein kinase II subunit alpha2.7.11.10.513
4anmWULCasein kinase II subunit alpha2.7.11.10.503
3q9xEMOCasein kinase II subunit alpha2.7.11.10.485
1dayGNPCasein kinase II subunit alpha2.7.11.10.478
4dgnLU2Casein kinase II subunit alpha2.7.11.10.476
1m2pHNACasein kinase II subunit alpha2.7.11.10.467
3ofm4B0Casein kinase II subunit alpha'2.7.11.10.465
1om1IQACasein kinase II subunit alpha2.7.11.10.460
2pvhP19Casein kinase II subunit alpha2.7.11.10.452