scPDB - 2pvn entry

Protein Data Bank Entry:

PDB ID : 2pvn

Resolution :2.000 Å

Experimental Method : X-ray

Deposition Date : 2007-05-09

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Casein kinase II subunit alpha
ID:	CSK2A_MAIZE
AC:	P28523
Organism:	Zea mays
Reign:	Eukaryota
TaxID:	4577
EC Number:	2.7.11.1

Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

Ligand binding site composition:

B-Factor:	31.592
Number of residues:	34
Including
Standard Amino Acids:	33
Non Standard Amino Acids:	0
Water Molecules:	1
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
0.942	644.625

% Hydrophobic	% Polar
51.83	48.17
According to VolSite

Ligand :

HET Code:	P63
Formula:	C20H16N8O
Molecular weight:	384.394 g/mol
DrugBank ID:	DB08362
Buried Surface Area:	67.91 %
Polar Surface area:	120.03 Å2

Number of
H-Bond Acceptors:	7
H-Bond Donors:	3
Rings:	4
Aromatic rings:	4
Anionic atoms:	0
Cationic atoms:	0
Rule of Five Violation:	0
Rotatable Bonds:	5

Mass center Coordinates

X	Y	Z
22.309	6.71538	20.3032

Binding mode :

What is Poseview ?

2D View
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Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
C13	CG1	VAL- 45	4.25	0	Hydrophobic	false
C16	CB	VAL- 45	4	0	Hydrophobic	false
C30	CG2	VAL- 53	4.15	0	Hydrophobic	false
C21	CG2	VAL- 53	3.62	0	Hydrophobic	false
C18	CG2	VAL- 53	3.54	0	Hydrophobic	false
O29	NZ	LYS- 68	2.73	160.73	H-Bond (Protein Donor)	false
C30	CD	LYS- 68	3.62	0	Hydrophobic	false
C30	CE2	PHE- 113	4.01	0	Hydrophobic	false
N01	N	VAL- 116	3.39	135.61	H-Bond (Protein Donor)	false
N10	O	VAL- 116	2.99	149.68	H-Bond (Ligand Donor)	false
C11	CB	ASN- 118	3.94	0	Hydrophobic	false
C11	SD	MET- 163	4.45	0	Hydrophobic	false
C30	CD1	ILE- 174	4.5	0	Hydrophobic	false
C19	CD1	ILE- 174	3.57	0	Hydrophobic	false
N27	OD2	ASP- 175	2.75	152.46	H-Bond (Ligand Donor)	false