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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2pupADPMethylthioribose kinase2.7.1.100

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2pupADPMethylthioribose kinase2.7.1.1001.000
2puiADPMethylthioribose kinase2.7.1.1000.660
2pulACPMethylthioribose kinase2.7.1.1000.610
2punACPMethylthioribose kinase2.7.1.1000.576
2olcADPMethylthioribose kinase2.7.1.1000.570
3nrrD16Bifunctional dihydrofolate reductase-thymidylate synthase/0.510
3eej53RUncharacterized protein/0.484
4yekTHMThymidine phosphorylase/0.475
1x8b824Wee1-like protein kinase2.7.10.20.472
3eem53VUncharacterized protein/0.471
2jc6QPPCalcium/calmodulin-dependent protein kinase type 1D2.7.11.170.470
3eigMTXDihydrofolate reductase1.5.1.30.465
2bakAQZMitogen-activated protein kinase 14/0.464
3qlxQLRUncharacterized protein/0.464
4a9yAQZMitogen-activated protein kinase 14/0.464
3a99ANPSerine/threonine-protein kinase pim-12.7.11.10.460
4y12AGSSerine/threonine-protein kinase PknG2.7.11.10.460
3pwhZMAAdenosine receptor A2a/0.460
5kgpACOPredicted acetyltransferase/0.458
3qaqQAQPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.457
3qly55VUncharacterized protein/0.457
5c03AGSNon-receptor tyrosine-protein kinase TYK22.7.10.20.457
3uzaT4GAdenosine receptor A2a/0.456
3wowANPCasein kinase II subunit alpha2.7.11.10.455
2bkkADPAminoglycoside 3'-phosphotransferase2.7.1.950.454
3ituIBMcGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.453
3eek53SUncharacterized protein/0.452
4bfrJ82Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform2.7.1.1530.452
2h8hH8HProto-oncogene tyrosine-protein kinase Src2.7.10.20.451
4k33ACPFibroblast growth factor receptor 32.7.10.10.451
4otpADPSerine/threonine-protein kinase RIO12.7.11.10.451
2plmSIB5-methylthioadenosine/S-adenosylhomocysteine deaminase3.5.4.280.450
2pywADPMethylthioribose kinase2.7.1.1000.450
3c0g3AMPeripheral plasma membrane protein CASK2.7.11.10.450
3itzP66Mitogen-activated protein kinase 14/0.450
4ajwVWNPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform2.7.1.1530.447
4kcfAKMFAD-dependent oxidoreductase/0.447
3uzcT4EAdenosine receptor A2a/0.447
1yqj6NPMitogen-activated protein kinase 14/0.446
4jrnANPRhoptry kinase family protein/0.446
2a19ANPInterferon-induced, double-stranded RNA-activated protein kinase2.7.11.10.445
3igoANPCalmodulin-domain protein kinase 1, putative/0.445
4ele31IDihydrofolate reductase/0.445
3nksACJProtoporphyrinogen oxidase1.3.3.40.444
3fkoFKOMitogen-activated protein kinase 14/0.443
3lfcZ86Mitogen-activated protein kinase 14/0.443
3ortAGSSerine/threonine protein kinase/0.443
3reyXACAdenosine receptor A2a/0.443
1e90MYCPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.441
1kqwRTLCellular retinol-binding protein type II/0.441
3tkyN7I(Iso)eugenol O-methyltransferase2.1.1.1460.441
3tm0ANPAminoglycoside 3'-phosphotransferase2.7.1.950.441
4yx6FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD/0.441
4bfsZVSPantothenate kinase2.7.1.330.440
4h9814QUncharacterized protein/0.440