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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2oazI96Methionine aminopeptidase 2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2oazI96Methionine aminopeptidase 2/1.000
1yw7A41Methionine aminopeptidase 2/0.737
1qzyTDEMethionine aminopeptidase 2/0.687
1r58AO5Methionine aminopeptidase 2/0.657
1r5hAO2Methionine aminopeptidase 2/0.629
2ga2A19Methionine aminopeptidase 2/0.625
1yw9A84Methionine aminopeptidase 2/0.607
2ea4F79Methionine aminopeptidase 2/0.606
2ea2F77Methionine aminopeptidase 2/0.598
1yw8A75Methionine aminopeptidase 2/0.585
1r5gAO1Methionine aminopeptidase 2/0.569
3pkeY10Methionine aminopeptidase 2/0.459
2gg8U15Methionine aminopeptidase/0.455
2whqHI6Acetylcholinesterase3.1.1.70.455
3b1dPLSBetaC-S lyase/0.455
4req5ADMethylmalonyl-CoA mutase large subunit5.4.99.20.454
2evmFC2Methionine aminopeptidase/0.453
2evcFC3Methionine aminopeptidase/0.451
4eywL0RCarnitine O-palmitoyltransferase 2, mitochondrial2.3.1.210.450
2j3qTFLAcetylcholinesterase3.1.1.70.448
2xuiTZ5Acetylcholinesterase3.1.1.70.442
2gywOBIAcetylcholinesterase3.1.1.70.440
2p98YE7Methionine aminopeptidase/0.440
2w6cBM4Acetylcholinesterase3.1.1.70.440