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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2idzZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.9

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2idzZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.91.000
2ie0ZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.730
2aqhNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.708
2aqkNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.672
2nv6ZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.649
2iebZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.640
4dreNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.623
1zidZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.606
3of2NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.604
4dquNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.604
1enyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.598
3oewNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.594
4trnNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.594
4dtiNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.574
1bvrNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.570
3oeyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.567
1enzNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.548
2pr2DG1Enoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.545
2ntvP1HEnoyl-[acyl-carrier-protein] reductase [NADH]/0.544
4rlh0WEEnoyl-[acyl-carrier-protein] reductase [NADH]/0.537
4biiPYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.530
2aq8NAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.528
4zjuNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.521
4bgePYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.516
4bqpNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.514
4bgiI4IEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.506
2aqiNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.487
1v35NAIEnoyl-ACP reductase/0.476
5hs1VORLanosterol 14-alpha demethylase/0.469
2jn3JN3Fatty acid-binding protein, liver/0.458
4m87NADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.458
2vn0TDZCytochrome P450 2C8/0.457
3zuxTCHTransporter/0.456
1u2gAPRNAD(P) transhydrogenase subunit alpha part 11.6.1.20.454
3sgv2BJDitrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.453
4o1mNADEnoyl-acyl carrier reductase/0.452
1yrcCAMCamphor 5-monooxygenase1.14.15.10.450
2po7CHDFerrochelatase, mitochondrial4.99.1.10.450
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.449
4cdmFO1Deoxyribodipyrimidine photolyase/0.448
3czr3CZCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.447
3opdHIEHeat shock protein 83/0.447
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.446
2vxoXMPGMP synthase [glutamine-hydrolyzing]6.3.5.20.446
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.445
1jioDEB6-deoxyerythronolide B hydroxylase/0.445
3tqhNDPQuinone oxidoreductase/0.444
5cvcPLPSerine racemase/0.444
1ykdCMPAdenylate cyclase/0.443
3gobHXXDdmC/0.443
3gwfFADCyclohexanone monooxygenase/0.443
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.442
1fm4DXCMajor pollen allergen Bet v 1-L/0.442
1rdt570Peroxisome proliferator-activated receptor gamma/0.442
1tw4CHDFatty acid-binding protein, liver/0.442
4ktkKTKCytochrome P450/0.442
4r20AERCytochrome P450 family 17 polypeptide 2/0.442
1og5SWFCytochrome P450 2C9/0.441
2qo4CHDFatty acid-binding protein 10-A, liver basic/0.441
2rhrEMOPutative ketoacyl reductase1.3.10.441
3ukoNADAlcohol dehydrogenase class-3/0.440