sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2hfo | FMN | Activator of photopigment and puc expression |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 2hfo | FMN | Activator of photopigment and puc expression | / | 1.000 | |
| 2hfn | FMN | Activator of photopigment and puc expression | / | 0.597 | |
| 3mzi | FMN | Activator of photopigment and puc expression | / | 0.563 | |
| 2byc | FMN | Blue-light receptor of the BLUF-family | / | 0.531 | |
| 1x0p | FAD | Tll0078 protein | / | 0.515 | |
| 3cd5 | 7HI | 3-hydroxy-3-methylglutaryl-coenzyme A reductase | 1.1.1.34 | 0.483 | |
| 4yus | FMN | Family 3 adenylate cyclase | / | 0.478 | |
| 1w1r | ZEA | Cytokinin dehydrogenase 1 | 1.5.99.12 | 0.474 | |
| 3h86 | AP5 | Adenylate kinase | / | 0.470 | |
| 1h1w | ATP | 3-phosphoinositide-dependent protein kinase 1 | 2.7.11.1 | 0.467 | |
| 2iml | FMN | Uncharacterized protein | / | 0.467 | |
| 3gfz | FMN | Uncharacterized protein | / | 0.463 | |
| 3gg0 | FMN | Uncharacterized protein | / | 0.463 | |
| 3f0g | C5P | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | / | 0.461 | |
| 4cta | ATP | CinA-like protein | / | 0.457 | |
| 1g6c | IFP | Thiamine-phosphate synthase | / | 0.453 | |
| 1qnf | HDF | Deoxyribodipyrimidine photo-lyase | 4.1.99.3 | 0.452 | |
| 2q6b | HR2 | 3-hydroxy-3-methylglutaryl-coenzyme A reductase | 1.1.1.34 | 0.452 | |
| 4nt0 | 3DU | Orotidine 5'-phosphate decarboxylase | 4.1.1.23 | 0.451 | |
| 4i4e | 1BQ | Focal adhesion kinase 1 | 2.7.10.2 | 0.449 | |
| 4jrn | ANP | Rhoptry kinase family protein | / | 0.448 | |
| 3m8p | 65B | Gag-Pol polyprotein | 2.7.7.49 | 0.447 | |
| 3r6p | A8S | Abscisic acid receptor PYL10 | / | 0.447 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.447 | |
| 2btd | ADP | PEP-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL | 2.7 | 0.446 | |
| 3gfx | FMN | Uncharacterized protein | / | 0.446 | |
| 3zvv | XAZ | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform | 2.7.1.153 | 0.446 | |
| 4xvu | ATP | ATPase GET3 | / | 0.446 | |
| 1g67 | TZP | Thiamine-phosphate synthase | / | 0.445 | |
| 5fkn | TDC | Tetracycline repressor protein class D | / | 0.445 | |
| 1f8s | FAD | L-amino-acid oxidase | 1.4.3.2 | 0.444 | |
| 1g6c | TZP | Thiamine-phosphate synthase | / | 0.444 | |
| 2zza | FOL | Dihydrofolate reductase | / | 0.443 | |
| 3kbz | 2T4 | Fructose-1,6-bisphosphatase 1 | 3.1.3.11 | 0.442 | |
| 2xgo | ZKD | Uncharacterized protein | / | 0.440 | |
| 4aw0 | ATP | 3-phosphoinositide-dependent protein kinase 1 | 2.7.11.1 | 0.440 | |
| 4dpw | AGS | Mevalonate diphosphate decarboxylase | / | 0.440 | |
| 5c7o | NAD | Glyceraldehyde-3-phosphate dehydrogenase, testis-specific | 1.2.1.12 | 0.440 |