1.400 Å
X-ray
2000-11-03
Name: | Thiamine-phosphate synthase |
---|---|
ID: | THIE_BACSU |
AC: | P39594 |
Organism: | Bacillus subtilis |
Reign: | Bacteria |
TaxID: | 224308 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 9.151 |
---|---|
Number of residues: | 27 |
Including | |
Standard Amino Acids: | 25 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
0.633 | 634.500 |
% Hydrophobic | % Polar |
---|---|
51.06 | 48.94 |
According to VolSite |
HET Code: | IFP |
---|---|
Formula: | C6H6F3N3 |
Molecular weight: | 177.127 g/mol |
DrugBank ID: | DB02885 |
Buried Surface Area: | 68.77 % |
Polar Surface area: | 51.92 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 1 |
H-Bond Donors: | 2 |
Rings: | 1 |
Aromatic rings: | 0 |
Anionic atoms: | 0 |
Cationic atoms: | 2 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 1 |
X | Y | Z |
---|---|---|
16.2598 | 41.8451 | 15.9275 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
F2 | CZ | TYR- 29 | 3.31 | 0 | Hydrophobic |
CM2 | CE2 | TYR- 29 | 3.8 | 0 | Hydrophobic |
F1 | CD1 | ILE- 31 | 3.64 | 0 | Hydrophobic |
N3A | NE2 | GLN- 57 | 3.19 | 163.1 | H-Bond (Protein Donor) |
N4A | OE1 | GLN- 57 | 3.09 | 171.58 | H-Bond (Ligand Donor) |
DuAr | DuAr | HIS- 107 | 3.76 | 0 | Aromatic Face/Face |
C7A | CB | ALA- 130 | 4.1 | 0 | Hydrophobic |
F3 | CE1 | TYR- 147 | 3.35 | 0 | Hydrophobic |
F1 | CG1 | VAL- 184 | 3.68 | 0 | Hydrophobic |
C5A | CD1 | ILE- 186 | 4.12 | 0 | Hydrophobic |
F1 | CD1 | ILE- 186 | 3.69 | 0 | Hydrophobic |
F1 | CB | SER- 206 | 3.31 | 0 | Hydrophobic |