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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2gvdFKPAdenylate cyclase type 2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2gvdFKPAdenylate cyclase type 2/1.000
2gvdFKPAdenylate cyclase type 5/1.000
1cjkFOKAdenylate cyclase type 2/0.626
1cjkFOKAdenylate cyclase type 5/0.626
1cs4FOKAdenylate cyclase type 2/0.609
1cs4FOKAdenylate cyclase type 5/0.609
1cjtFOKAdenylate cyclase type 2/0.605
1cjtFOKAdenylate cyclase type 5/0.605
1culFOKAdenylate cyclase type 2/0.593
1culFOKAdenylate cyclase type 5/0.593
1tl7FOKAdenylate cyclase type 2/0.589
1tl7FOKAdenylate cyclase type 5/0.589
1cjuFOKAdenylate cyclase type 2/0.555
1cjuFOKAdenylate cyclase type 5/0.555
3c15FOKAdenylate cyclase type 2/0.543
3c15FOKAdenylate cyclase type 5/0.543
3c16FOKAdenylate cyclase type 2/0.542
3c16FOKAdenylate cyclase type 5/0.542
1cjvFOKAdenylate cyclase type 2/0.541
1cjvFOKAdenylate cyclase type 5/0.541
3maaFKPAdenylate cyclase type 2/0.531
3maaFKPAdenylate cyclase type 5/0.531
1u0hFOKAdenylate cyclase type 2/0.519
1u0hFOKAdenylate cyclase type 5/0.519
3c14FOKAdenylate cyclase type 2/0.511
3c14FOKAdenylate cyclase type 5/0.511