sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2c3y | HTL | Pyruvate synthase |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 2c3y | HTL | Pyruvate synthase | / | 1.000 | |
| 1kek | HTL | Pyruvate synthase | / | 0.607 | |
| 2uza | HTL | Pyruvate synthase | / | 0.572 | |
| 2c3p | 1TP | Pyruvate synthase | / | 0.567 | |
| 2pda | TPP | Pyruvate synthase | / | 0.544 | |
| 2c3o | TPP | Pyruvate synthase | / | 0.540 | |
| 2c42 | TPP | Pyruvate synthase | / | 0.538 | |
| 2c3u | 2TP | Pyruvate synthase | / | 0.528 | |
| 5c4i | TPP | Oxalate oxidoreductase subunit alpha | / | 0.502 | |
| 5c4i | TPP | Oxalate oxidoreductase subunit beta | / | 0.502 | |
| 2ihu | TP9 | N(2)-(2-carboxyethyl)arginine synthase | / | 0.472 | |
| 3inw | JZB | Heat shock protein HSP 90-alpha | / | 0.469 | |
| 3btj | DEQ | HTH-type transcriptional regulator QacR | / | 0.465 | |
| 1dxy | NAD | D-2-hydroxyisocaproate dehydrogenase | 1.1.1 | 0.458 | |
| 3inx | JZC | Heat shock protein HSP 90-alpha | / | 0.457 | |
| 1uy9 | PU6 | Heat shock protein HSP 90-alpha | / | 0.454 | |
| 2x7h | PFN | Prostaglandin reductase 3 | 1 | 0.454 | |
| 4jub | TPP | Benzoylformate decarboxylase | 4.1.1.7 | 0.453 | |
| 1lhw | ESM | Sex hormone-binding globulin | / | 0.450 | |
| 2wo7 | ASV | Isopenicillin N synthase | 1.21.3.1 | 0.450 | |
| 5dib | NAD | Betaine-aldehyde dehydrogenase | / | 0.450 | |
| 2ag0 | TPP | Benzaldehyde lyase | / | 0.449 | |
| 2lba | CHO | Fatty acid binding protein 6 | / | 0.449 | |
| 4b14 | 4XB | Glycylpeptide N-tetradecanoyltransferase | / | 0.449 | |
| 3ngl | NAP | Bifunctional protein FolD | / | 0.448 | |
| 1uy8 | PU5 | Heat shock protein HSP 90-alpha | / | 0.446 | |
| 2ihv | TPP | N(2)-(2-carboxyethyl)arginine synthase | / | 0.446 | |
| 3drc | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.446 | |
| 4fqs | LYA | Thymidylate synthase ThyA | / | 0.446 | |
| 4jva | 1OR | cAMP-dependent protein kinase type II-beta regulatory subunit | / | 0.446 | |
| 2bl9 | CP6 | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.445 | |
| 1bwl | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.444 | |
| 2uz1 | TPP | Benzaldehyde lyase | / | 0.444 | |
| 3hz1 | 37D | Heat shock protein HSP 90-alpha | / | 0.444 | |
| 1e0a | GNP | Cell division control protein 42 homolog | / | 0.443 | |
| 4oxi | GAP | Enterobactin synthetase component F-related protein | / | 0.443 | |
| 1x2h | LPA | Lipoate-protein ligase A | 6.3.1.20 | 0.442 | |
| 2geu | COK | Pantothenate kinase | 2.7.1.33 | 0.442 | |
| 2oci | TYC | Valacyclovir hydrolase | 3.1 | 0.442 | |
| 3fhx | PLP | Pyridoxal kinase | 2.7.1.35 | 0.441 | |
| 1bvr | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.440 |