Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1xyyFMNFlavodoxin

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1xyyFMNFlavodoxin/1.000
3f6rFMNFlavodoxin/0.594
1bu5RBFFlavodoxin/0.561
5tgzFMNCannabinoid receptor 1/0.526
1c7fFMNFlavodoxin/0.520
2fx2FMNFlavodoxin/0.501
1akwFMNFlavodoxin/0.485
1xyvFMNFlavodoxin/0.477
1j9zFMNNADPH--cytochrome P450 reductase/0.473
1wsbFMNFlavodoxin/0.468
1gpnHUBAcetylcholinesterase3.1.1.70.465
1j9gFMNFlavodoxin/0.461
2ha6SCKAcetylcholinesterase3.1.1.70.461
5xraFMNCannabinoid receptor 1/0.460
1azlFMNFlavodoxin/0.459
2qo5CHDFatty acid-binding protein 10-A, liver basic/0.458
1odcA8BAcetylcholinesterase3.1.1.70.457
1q84TZ4Acetylcholinesterase3.1.1.70.457
1akrFMNFlavodoxin/0.455
3ojxFMNNADPH--cytochrome P450 reductase/0.452
4b7zQ4QAcetylcholinesterase3.1.1.70.450
4y7cFMNNADPH--cytochrome P450 reductase/0.450
4araC56Acetylcholinesterase3.1.1.70.449
2po3T4K4-dehydrase/0.448
3fhxPXLPyridoxal kinase2.7.1.350.448
4fx2FMNFlavodoxin/0.448
3kapFMNFlavodoxin/0.447
3biy01KHistone acetyltransferase p300/0.446
3exhTPPPyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial1.2.4.10.446
3exhTPPPyruvate dehydrogenase E1 component subunit beta, mitochondrial1.2.4.10.446
2jf0HBPAcetylcholinesterase3.1.1.70.445
2xukTZ5Acetylcholinesterase3.1.1.70.445
1zgbA1EAcetylcholinesterase3.1.1.70.444
1u65CP0Acetylcholinesterase3.1.1.70.443
3zv7NHGAcetylcholinesterase3.1.1.70.442
5fx2FMNFlavodoxin/0.441