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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1udcUFMUDP-glucose 4-epimerase5.1.3.2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1udcUFMUDP-glucose 4-epimerase5.1.3.21.000
1udbUFGUDP-glucose 4-epimerase5.1.3.20.632
1kvuUPGUDP-glucose 4-epimerase5.1.3.20.533
1ek6UPGUDP-glucose 4-epimerase/0.515
1kvtUPGUDP-glucose 4-epimerase5.1.3.20.498
1lrlUPGUDP-glucose 4-epimerase5.1.3.20.482
1a9zUPGUDP-glucose 4-epimerase5.1.3.20.461
1i3mUD1UDP-glucose 4-epimerase/0.455
1lrjUD1UDP-glucose 4-epimerase5.1.3.20.441