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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1trgCB3Thymidylate synthase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1trgCB3Thymidylate synthase/1.000
1tysDHFThymidylate synthase/0.641
3bhrTHGThymidylate synthase/0.576
1kceCB3Thymidylate synthase/0.572
1dnaCB3Thymidylate synthase/0.561
2ftoCB3Thymidylate synthase/0.536
2bbqPFGThymidylate synthase/0.523
1nceCB3Thymidylate synthase/0.521
3bgxMEFThymidylate synthase/0.506
4knzCB3Thymidylate synthase/0.505
3bhlTHGThymidylate synthase/0.502
1jtqLY3Thymidylate synthase/0.495
1jtuLYBThymidylate synthase/0.486
1qzfCB3Bifunctional dihydrofolate reductase-thymidylate synthase/0.482
4fqsLYAThymidylate synthase ThyA/0.482
4isk1JYThymidylate synthase/0.482
1kzjCB3Thymidylate synthase/0.480
1tduCB3Thymidylate synthase/0.476
1an5CB3Thymidylate synthase/0.474
4gevCB3Thymidylate synthase/0.471
3uwlFOZThymidylate synthase/0.468
1aiqCB3Thymidylate synthase/0.466
1f4fTP3Thymidylate synthase/0.466
1zprCB3Thymidylate synthase/0.466
1ju6LYAThymidylate synthase2.1.1.450.465
1bq1CB3Thymidylate synthase/0.464
4ez8DHFThymidylate synthase2.1.1.450.464
1axwMTXThymidylate synthase/0.461
1fwmCB3Thymidylate synthase/0.461
4fogC2FThymidylate synthase ThyA/0.460
1jutLYDThymidylate synthase/0.447
1kziTHGThymidylate synthase/0.446
2ftoTMPThymidylate synthase/0.446
2tscCB3Thymidylate synthase/0.444
1tsdF89Thymidylate synthase/0.443