1.750 Å
X-ray
2002-02-06
Name: | Thymidylate synthase |
---|---|
ID: | TYSY_ECOLI |
AC: | P0A884 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 3 % |
B | 97 % |
B-Factor: | 36.180 |
---|---|
Number of residues: | 39 |
Including | |
Standard Amino Acids: | 35 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 3 |
Cofactors: | UMP |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.007 | 529.875 |
% Hydrophobic | % Polar |
---|---|
47.77 | 52.23 |
According to VolSite |
HET Code: | THG |
---|---|
Formula: | C19H21N7O6 |
Molecular weight: | 443.413 g/mol |
DrugBank ID: | DB02031 |
Buried Surface Area: | 50.51 % |
Polar Surface area: | 212.92 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 11 |
H-Bond Donors: | 6 |
Rings: | 3 |
Aromatic rings: | 1 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 9 |
X | Y | Z |
---|---|---|
67.2695 | 20.2045 | -6.66731 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C4' | CB | ILE- 79 | 4.09 | 0 | Hydrophobic |
C2' | CG2 | ILE- 79 | 4.18 | 0 | Hydrophobic |
C7 | CH2 | TRP- 80 | 3.77 | 0 | Hydrophobic |
C6 | CZ2 | TRP- 80 | 4.04 | 0 | Hydrophobic |
C9 | CE2 | TRP- 80 | 4.33 | 0 | Hydrophobic |
C9 | CZ3 | TRP- 83 | 3.85 | 0 | Hydrophobic |
C7 | CD1 | LEU- 143 | 3.53 | 0 | Hydrophobic |
C6' | CG2 | VAL- 262 | 4.04 | 0 | Hydrophobic |
N2 | O | ALA- 263 | 2.94 | 154.17 | H-Bond (Ligand Donor) |
C6 | C5 | UMP- 304 | 3.36 | 0 | Hydrophobic |
OX2 | O | HOH- 461 | 3.37 | 135.14 | H-Bond (Protein Donor) |
OX2 | O | HOH- 480 | 2.81 | 179.93 | H-Bond (Protein Donor) |