1.400 Å
X-ray
2007-11-28
Name: | Thymidylate synthase |
---|---|
ID: | TYSY_ECOLI |
AC: | P0A884 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 3 % |
B | 97 % |
B-Factor: | 15.111 |
---|---|
Number of residues: | 40 |
Including | |
Standard Amino Acids: | 37 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.984 | 1002.375 |
% Hydrophobic | % Polar |
---|---|
42.76 | 57.24 |
According to VolSite |
HET Code: | THG |
---|---|
Formula: | C19H21N7O6 |
Molecular weight: | 443.413 g/mol |
DrugBank ID: | DB02031 |
Buried Surface Area: | 55.14 % |
Polar Surface area: | 212.92 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 11 |
H-Bond Donors: | 6 |
Rings: | 3 |
Aromatic rings: | 1 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 9 |
X | Y | Z |
---|---|---|
66.6576 | 20.5189 | -5.96806 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C2' | CB | ILE- 79 | 4.24 | 0 | Hydrophobic |
C1' | CG2 | ILE- 79 | 4.06 | 0 | Hydrophobic |
N1 | OD2 | ASP- 169 | 2.71 | 168.46 | H-Bond (Ligand Donor) |
N8 | OD2 | ASP- 169 | 3.28 | 133.06 | H-Bond (Ligand Donor) |
C7 | CB | ASP- 169 | 4.46 | 0 | Hydrophobic |
C7 | CB | LEU- 172 | 4.12 | 0 | Hydrophobic |
C5' | CB | PHE- 176 | 4.25 | 0 | Hydrophobic |
N2 | O | ALA- 263 | 2.79 | 129.5 | H-Bond (Ligand Donor) |
N2 | O | HOH- 268 | 2.99 | 128.35 | H-Bond (Ligand Donor) |