sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1tg2 | H2B | Phenylalanine-4-hydroxylase | 1.14.16.1 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 1tg2 | H2B | Phenylalanine-4-hydroxylase | 1.14.16.1 | 1.000 | |
| 5pah | LDP | Phenylalanine-4-hydroxylase | 1.14.16.1 | 0.614 | |
| 1lrm | HBI | Phenylalanine-4-hydroxylase | 1.14.16.1 | 0.602 | |
| 4pah | LNR | Phenylalanine-4-hydroxylase | 1.14.16.1 | 0.594 | |
| 1dmw | HBI | Phenylalanine-4-hydroxylase | 1.14.16.1 | 0.593 | |
| 1j8u | H4B | Phenylalanine-4-hydroxylase | 1.14.16.1 | 0.593 | |
| 2toh | HBI | Tyrosine 3-monooxygenase | 1.14.16.2 | 0.571 | |
| 3pah | XDE | Phenylalanine-4-hydroxylase | 1.14.16.1 | 0.530 | |
| 3up3 | XCA | aceDAF-12 | / | 0.471 | |
| 2gby | BRN | HTH-type transcriptional regulator QacR | / | 0.461 | |
| 1ad3 | NAD | Aldehyde dehydrogenase, dimeric NADP-preferring | / | 0.457 | |
| 3hf6 | LX0 | Tryptophan 5-hydroxylase 1 | 1.14.16.4 | 0.456 | |
| 4xd1 | T3Q | Qdtf | / | 0.455 | |
| 4h6p | FMN | Chromate reductase | / | 0.452 | |
| 1swt | BTN | Streptavidin | / | 0.451 | |
| 3n3z | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.451 | |
| 3nmp | PYV | Abscisic acid receptor PYL2 | / | 0.451 | |
| 4xcz | T3Q | Qdtf | / | 0.451 | |
| 1tl7 | ONM | Adenylate cyclase type 2 | / | 0.450 | |
| 1tl7 | ONM | Adenylate cyclase type 5 | / | 0.450 | |
| 4a4x | JUP | Serine/threonine-protein kinase Nek2 | 2.7.11.1 | 0.450 | |
| 1y2k | 7DE | cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 3.1.4.53 | 0.449 | |
| 3zhq | TPP | Multifunctional 2-oxoglutarate metabolism enzyme | 1.2.4.2 | 0.449 | |
| 4psb | GA3 | Cytokinin-specific binding protein | / | 0.448 | |
| 3hfb | ML4 | Tryptophan 5-hydroxylase 1 | 1.14.16.4 | 0.447 | |
| 4kp6 | 1S1 | cAMP-specific 3',5'-cyclic phosphodiesterase 4B | 3.1.4.53 | 0.447 | |
| 1axw | MTX | Thymidylate synthase | / | 0.446 | |
| 1dr4 | HBI | Dihydrofolate reductase | 1.5.1.3 | 0.446 | |
| 1sre | HAB | Streptavidin | / | 0.446 | |
| 3bt9 | DEQ | HTH-type transcriptional regulator QacR | / | 0.446 | |
| 3bxx | QUE | Dihydroflavonol 4-reductase | 1.1.1.219 | 0.446 | |
| 2h94 | FAD | Lysine-specific histone demethylase 1A | 1 | 0.445 | |
| 5dp2 | NAP | CurF | / | 0.445 | |
| 1kw0 | H4B | Phenylalanine-4-hydroxylase | 1.14.16.1 | 0.444 | |
| 2zu9 | GDP | Mannosyl-3-phosphoglycerate synthase | 2.4.1.217 | 0.443 | |
| 3dy8 | 5GP | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.443 | |
| 3ntr | NAD | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase | 1.1.1.18 | 0.443 | |
| 1h66 | RH1 | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.442 | |
| 1kyv | RBF | 6,7-dimethyl-8-ribityllumazine synthase | 2.5.1.78 | 0.442 | |
| 2fhn | BNI | Avidin-related protein 4/5 | / | 0.442 | |
| 2ea4 | F79 | Methionine aminopeptidase 2 | / | 0.441 | |
| 3jsi | WTC | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.441 | |
| 4ajf | F03 | cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A | 3.1.4.17 | 0.441 | |
| 3c3d | FO1 | 2-phospho-L-lactate transferase | / | 0.440 | |
| 3dyq | PCG | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.440 | |
| 3jyo | NAD | Quinate/shikimate dehydrogenase (NAD(+)) | / | 0.440 |