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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1n2iPAJPantothenate synthetase6.3.2.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1n2iPAJPantothenate synthetase6.3.2.11.000
1n2hPAJPantothenate synthetase6.3.2.10.652
3cow52HPantothenate synthetase6.3.2.10.618
1n2jPAFPantothenate synthetase6.3.2.10.575
3ioeA7DPantothenate synthetase6.3.2.10.549
3ivxFG6Pantothenate synthetase6.3.2.10.548
3coy53HPantothenate synthetase6.3.2.10.535
1n2eAPCPantothenate synthetase6.3.2.10.521
1n2gAPCPantothenate synthetase6.3.2.10.499
4ddhMS0Pantothenate synthetase6.3.2.10.479
3ivgFG5Pantothenate synthetase6.3.2.10.477
3iocA5DPantothenate synthetase6.3.2.10.476
2x3fAPCPantothenate synthetase/0.475
3isjA8DPantothenate synthetase6.3.2.10.459
3coz54HPantothenate synthetase6.3.2.10.458
1n2bPAFPantothenate synthetase6.3.2.10.453