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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1h42FADFerredoxin--NADP reductase1.18.1.2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1h42FADFerredoxin--NADP reductase1.18.1.21.000
1ogiFADFerredoxin--NADP reductase1.18.1.20.795
1e62FADFerredoxin--NADP reductase1.18.1.20.688
1ogjFADFerredoxin--NADP reductase1.18.1.20.661
4af7FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.599
1queFADFerredoxin--NADP reductase1.18.1.20.586
3vo2FADFerredoxin--NADP reductase/0.581
1gr1FADFerredoxin--NADP reductase1.18.1.20.577
4af6FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.570
3mhpFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.567
1gawFADFerredoxin/0.552
1bjkFADFerredoxin--NADP reductase1.18.1.20.543
3zc3FADFerredoxin--NADP reductase1.18.1.20.540
4c43FADFerredoxin--NADP reductase1.18.1.20.536
1e64FADFerredoxin--NADP reductase1.18.1.20.534
1bx1FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.530
1fndFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.529
1sm4FADFerredoxin--NADP reductase/0.528
1w35FADFerredoxin--NADP reductase1.18.1.20.527
1fnbFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.526
1e63FADFerredoxin--NADP reductase1.18.1.20.523
1fncFDAFerredoxin--NADP reductase, chloroplastic1.18.1.20.523
2b5oFADFerredoxin--NADP reductase1.18.1.20.522
1bx0FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.519
1gaqFADFerredoxin/0.517
1gjrFADFerredoxin--NADP reductase1.18.1.20.512
4bprFADFerredoxin--NADP reductase1.18.1.20.508
1qgyFADFerredoxin--NADP reductase1.18.1.20.502
1qgzFADFerredoxin--NADP reductase1.18.1.20.502
1go2FADFerredoxin--NADP reductase1.18.1.20.494
3w5uFADFerredoxin/0.491
2rc6FADFerredoxin--NADP reductase/0.490
3qfcFADNADPH--cytochrome P450 reductase/0.487
1h85FADFerredoxin--NADP reductase1.18.1.20.486
3zbtFADFerredoxin--NADP reductase1.18.1.20.485
1qh0FADFerredoxin--NADP reductase1.18.1.20.481
3jqrFADFerredoxin--NADP reductase, apicoplast/0.480
1w87FADFerredoxin--NADP reductase1.18.1.20.479
2ewmNAD(S)-1-Phenylethanol dehydrogenase1.1.1.3110.463
2ok8FADFerredoxin--NADP reductase, apicoplast/0.462
2zevIPEGeranylgeranyl pyrophosphate synthase/0.458
1amoFADNADPH--cytochrome P450 reductase/0.456
5ah5LSSLeucine--tRNA ligase/0.456
1ewyFADFerredoxin--NADP reductase1.18.1.20.454
3fpkFADFerredoxin-NADP reductase/0.453
1b2rFADFerredoxin--NADP reductase1.18.1.20.452
2vbpVB1Isopenicillin N synthase1.21.3.10.451
5a4vQUEGlutathione S-transferase F22.5.1.180.451
2piaFMNPhthalate dioxygenase reductase/0.447
2wsa646Glycylpeptide N-tetradecanoyltransferase/0.446
3uzwNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.446
4y9uFADNADPH--cytochrome P450 reductase/0.445
4j7hTRHPCZA361.3/0.443
1m4iCOAAminoglycoside 2'-N-acetyltransferase2.3.10.442
4uajFADNa(+)-translocating NADH-quinone reductase subunit F/0.442
4i101BSBeta-secretase 13.4.23.460.440