scPDB - 4i10 entry

Protein Data Bank Entry:

PDB ID : 4i10

Resolution :2.070 Å

Experimental Method : X-ray

Deposition Date : 2012-11-19

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Beta-secretase 1
ID:	BACE1_HUMAN
AC:	P56817
Organism:	Homo sapiens
Reign:	Eukaryota
TaxID:	9606
EC Number:	3.4.23.46

Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

Ligand binding site composition:

B-Factor:	17.964
Number of residues:	35
Including
Standard Amino Acids:	33
Non Standard Amino Acids:	0
Water Molecules:	2
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
0.691	810.000

% Hydrophobic	% Polar
37.08	62.92
According to VolSite

Ligand :

HET Code:	1BS
Formula:	C26H25ClN5O
Molecular weight:	458.963 g/mol
DrugBank ID:	-
Buried Surface Area:	60.5 %
Polar Surface area:	80.34 Å2

Number of
H-Bond Acceptors:	4
H-Bond Donors:	3
Rings:	5
Aromatic rings:	3
Anionic atoms:	0
Cationic atoms:	1
Rule of Five Violation:	0
Rotatable Bonds:	5

Mass center Coordinates

X	Y	Z
10.7738	-17.8689	7.29688

Binding mode :

What is Poseview ?

2D View
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Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
C27	CD2	LEU- 91	3.62	0	Hydrophobic	false
C28	CD2	LEU- 91	3.64	0	Hydrophobic	false
C31	CD1	LEU- 91	3.8	0	Hydrophobic	false
C9	CE1	TYR- 132	3.54	0	Hydrophobic	false
CL1	CB	TYR- 132	3.85	0	Hydrophobic	false
C6	CB	GLN- 134	4.11	0	Hydrophobic	false
CL1	CD1	PHE- 169	4.02	0	Hydrophobic	false
C9	CE1	PHE- 169	4.48	0	Hydrophobic	false
C28	CE1	PHE- 169	4.37	0	Hydrophobic	false
C28	CZ2	TRP- 176	4.11	0	Hydrophobic	false
C27	CD1	ILE- 179	4.05	0	Hydrophobic	false
C15	CB	THR- 293	4.35	0	Hydrophobic	false
N24	N	THR- 293	2.97	164.12	H-Bond (Protein Donor)	false
O25	N	ASN- 294	2.88	153.22	H-Bond (Protein Donor)	false
C8	CD	ARG- 296	4.15	0	Hydrophobic	false
DuAr	CZ	ARG- 296	3.85	150.7	Pi/Cation	false