Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1gv4FADApoptosis-inducing factor 1, mitochondrial1.1.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1gv4FADApoptosis-inducing factor 1, mitochondrial1.1.11.000
4liiFADApoptosis-inducing factor 1, mitochondrial1.1.10.553
3gd3FADApoptosis-inducing factor 1, mitochondrial1.1.10.545
5fs8FADApoptosis-inducing factor 1, mitochondrial1.1.10.543
5fs6FADApoptosis-inducing factor 1, mitochondrial1.1.10.542
4bv6FADApoptosis-inducing factor 1, mitochondrial1.1.10.521
5fs7FADApoptosis-inducing factor 1, mitochondrial1.1.10.500
1m6iFADApoptosis-inducing factor 1, mitochondrial1.1.10.465
4h4pFADBiphenyl dioxygenase ferredoxin reductase subunit/0.443