sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1e3r | AND | Steroid Delta-isomerase | 5.3.3.1 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 1e3r | AND | Steroid Delta-isomerase | 5.3.3.1 | 1.000 | |
| 3ipt | EQU | Steroid Delta-isomerase | 5.3.3.1 | 0.579 | |
| 1e3v | DXC | Steroid Delta-isomerase | 5.3.3.1 | 0.574 | |
| 3fzw | EQU | Steroid Delta-isomerase | 5.3.3.1 | 0.568 | |
| 3ows | EQU | Steroid Delta-isomerase | 5.3.3.1 | 0.529 | |
| 3owy | EQU | Steroid Delta-isomerase | 5.3.3.1 | 0.519 | |
| 1ogx | EQU | Steroid Delta-isomerase | 5.3.3.1 | 0.516 | |
| 1cqs | EQU | Steroid Delta-isomerase | 5.3.3.1 | 0.513 | |
| 1oh0 | EQU | Steroid Delta-isomerase | 5.3.3.1 | 0.512 | |
| 1qjg | EQU | Steroid Delta-isomerase | 5.3.3.1 | 0.496 | |
| 1w6y | EQU | Steroid Delta-isomerase | 5.3.3.1 | 0.491 | |
| 1oho | EQU | Steroid Delta-isomerase | 5.3.3.1 | 0.490 | |
| 1gs3 | EQU | Steroid Delta-isomerase | 5.3.3.1 | 0.488 | |
| 4psb | GA3 | Cytokinin-specific binding protein | / | 0.480 | |
| 3gmd | 2M3 | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.473 | |
| 1eio | GCH | Gastrotropin | / | 0.472 | |
| 1lkd | BP6 | Biphenyl-2,3-diol 1,2-dioxygenase | 1.13.11.39 | 0.471 | |
| 3sn6 | P0G | Beta-2 adrenergic receptor | / | 0.470 | |
| 4h97 | 53S | Dihydrofolate reductase | 1.5.1.3 | 0.467 | |
| 3p9t | TCL | Repressor | / | 0.461 | |
| 2xvw | 9NR | Serum albumin | / | 0.457 | |
| 3ixp | 834 | Ecdysone receptor | / | 0.456 | |
| 2x9d | ITC | Tetracycline repressor protein class D | / | 0.455 | |
| 4ez8 | DHF | Thymidylate synthase | 2.1.1.45 | 0.455 | |
| 3gwf | NAP | Cyclohexanone monooxygenase | / | 0.454 | |
| 4g1z | 0VP | Vitamin D3 receptor A | / | 0.453 | |
| 1p44 | GEQ | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.451 | |
| 3ch6 | 311 | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.451 | |
| 2cl5 | BIE | Catechol O-methyltransferase | 2.1.1.6 | 0.450 | |
| 2fhk | MFN | Formylmethanofuran--tetrahydromethanopterin formyltransferase | 2.3.1.101 | 0.450 | |
| 4bb5 | HD2 | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.450 | |
| 4qa2 | SHH | Histone deacetylase 8 | 3.5.1.98 | 0.450 | |
| 1h36 | R88 | Squalene--hopene cyclase | 4.2.1.129 | 0.449 | |
| 1n83 | CLR | Nuclear receptor ROR-alpha | / | 0.449 | |
| 3vtc | TK3 | Vitamin D3 receptor | / | 0.449 | |
| 3bej | MUF | Bile acid receptor | / | 0.448 | |
| 4bb6 | HD1 | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.448 | |
| 4g34 | 924 | Eukaryotic translation initiation factor 2-alpha kinase 3 | 2.7.11.1 | 0.448 | |
| 1h35 | R01 | Squalene--hopene cyclase | 4.2.1.129 | 0.447 | |
| 3bt9 | DEQ | HTH-type transcriptional regulator QacR | / | 0.447 | |
| 3t8x | T8X | T-cell surface glycoprotein CD1b | / | 0.447 | |
| 4bfu | ZVU | Pantothenate kinase | 2.7.1.33 | 0.447 | |
| 4jda | A9S | Abscisic acid receptor PYL3 | / | 0.447 | |
| 4qa0 | SHH | Histone deacetylase 8 | 3.5.1.98 | 0.447 | |
| 1o1v | TCH | Gastrotropin | / | 0.446 | |
| 4ure | 1PS | Cyclohexanol dehydrogenase | / | 0.446 | |
| 3pqb | VGP | Putative oxidoreductase | / | 0.445 | |
| 2fpc | SCG | Strictosidine synthase | 4.3.3.2 | 0.444 | |
| 4dsb | A8S | Abscisic acid receptor PYL3 | / | 0.444 | |
| 1lri | CLR | Beta-elicitin cryptogein | / | 0.443 | |
| 1tdu | DUR | Thymidylate synthase | / | 0.443 | |
| 1y5r | C0R | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.443 | |
| 2rbe | ZMG | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.443 | |
| 4g47 | TZF | Mycocyclosin synthase | 1.14.21.9 | 0.443 | |
| 5hs1 | VOR | Lanosterol 14-alpha demethylase | / | 0.443 | |
| 2dw4 | FAD | Lysine-specific histone demethylase 1A | 1 | 0.442 | |
| 3g49 | 3G4 | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.442 | |
| 3l0l | HC3 | Nuclear receptor ROR-gamma | / | 0.442 | |
| 1txi | TX5 | Vitamin D3 receptor | / | 0.441 | |
| 1zdw | FLV | Prenyltransferase | / | 0.441 | |
| 3ezp | B3N | Histone deacetylase 8 | 3.5.1.98 | 0.441 | |
| 3fmz | 2T1 | Retinol-binding protein 4 | / | 0.441 | |
| 3ssn | MVI | Mycinamicin VI 2''-O-methyltransferase | / | 0.441 | |
| 3oq1 | 3OQ | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.440 | |
| 3up0 | D7S | aceDAF-12 | / | 0.440 |