2.000 Å
X-ray
2005-12-25
Name: | Formylmethanofuran--tetrahydromethanopterin formyltransferase |
---|---|
ID: | FTR_METKA |
AC: | Q49610 |
Organism: | Methanopyrus kandleri |
Reign: | Archaea |
TaxID: | 190192 |
EC Number: | 2.3.1.101 |
Chain Name: | Percentage of Residues within binding site |
---|---|
C | 40 % |
D | 60 % |
B-Factor: | 19.363 |
---|---|
Number of residues: | 30 |
Including | |
Standard Amino Acids: | 30 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.353 | 1096.875 |
% Hydrophobic | % Polar |
---|---|
53.54 | 46.46 |
According to VolSite |
HET Code: | MFN |
---|---|
Formula: | C35H39N4O16 |
Molecular weight: | 771.701 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 48.69 % |
Polar Surface area: | 339.41 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 15 |
H-Bond Donors: | 4 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 5 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 27 |
X | Y | Z |
---|---|---|
-16.1358 | 91.2875 | 50.1772 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C8 | CG2 | ILE- 48 | 4.2 | 0 | Hydrophobic |
C10 | CE | MET- 49 | 3.46 | 0 | Hydrophobic |
C13 | CE | MET- 98 | 3.95 | 0 | Hydrophobic |
C10 | CE | MET- 98 | 3.56 | 0 | Hydrophobic |
C17 | CB | LYS- 123 | 3.98 | 0 | Hydrophobic |
N2 | O | LYS- 123 | 3.07 | 149.72 | H-Bond (Ligand Donor) |
C11 | CD2 | LEU- 124 | 4.13 | 0 | Hydrophobic |
C13 | CE2 | PHE- 127 | 3.56 | 0 | Hydrophobic |
C6 | CB | PHE- 127 | 4.42 | 0 | Hydrophobic |
C18 | CE1 | PHE- 218 | 4.35 | 0 | Hydrophobic |
C12 | CD2 | LEU- 219 | 4.26 | 0 | Hydrophobic |