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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1cjvFOKAdenylate cyclase type 2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1cjvFOKAdenylate cyclase type 2/1.000
1cjvFOKAdenylate cyclase type 5/1.000
1tl7FOKAdenylate cyclase type 2/0.602
1tl7FOKAdenylate cyclase type 5/0.602
1cjuFOKAdenylate cyclase type 2/0.587
1cjuFOKAdenylate cyclase type 5/0.587
3c15FOKAdenylate cyclase type 2/0.578
3c15FOKAdenylate cyclase type 5/0.578
1cjtFOKAdenylate cyclase type 2/0.571
1cjtFOKAdenylate cyclase type 5/0.571
1cjkFOKAdenylate cyclase type 2/0.547
1cjkFOKAdenylate cyclase type 5/0.547
1cs4FOKAdenylate cyclase type 2/0.534
1cs4FOKAdenylate cyclase type 5/0.534
1culFOKAdenylate cyclase type 2/0.520
1culFOKAdenylate cyclase type 5/0.520
1u0hFOKAdenylate cyclase type 2/0.508
1u0hFOKAdenylate cyclase type 5/0.508
3c16FOKAdenylate cyclase type 2/0.487
3c16FOKAdenylate cyclase type 5/0.487
3maaFKPAdenylate cyclase type 2/0.482
3maaFKPAdenylate cyclase type 5/0.482
2gvdFKPAdenylate cyclase type 2/0.478
2gvdFKPAdenylate cyclase type 5/0.478
3c14FOKAdenylate cyclase type 2/0.460
3c14FOKAdenylate cyclase type 5/0.460