sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1ao0 | 5GP | Amidophosphoribosyltransferase |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 1ao0 | 5GP | Amidophosphoribosyltransferase | / | 1.000 | |
| 1p4a | PCP | Pur operon repressor | / | 0.476 | |
| 1bwf | ATF | Glycerol kinase | / | 0.467 | |
| 4dbz | NDP | Putative ketoacyl reductase | 1.3.1 | 0.460 | |
| 4hmz | 18T | dTDP-4-dehydro-6-deoxyglucose 3-epimerase | 5.1.3.27 | 0.456 | |
| 1fmj | RTL | Retinol dehydratase | / | 0.455 | |
| 3ime | BZ2 | Pantothenate synthetase | 6.3.2.1 | 0.450 | |
| 4yaf | 2AM | NADPH--cytochrome P450 reductase | / | 0.450 | |
| 2bpo | NAP | NADPH--cytochrome P450 reductase | / | 0.449 | |
| 3zw9 | NAD | Peroxisomal bifunctional enzyme | 1.1.1.35 | 0.448 | |
| 2cy0 | NAP | Shikimate dehydrogenase (NADP(+)) | / | 0.447 | |
| 1g0r | THM | Glucose-1-phosphate thymidylyltransferase | / | 0.445 | |
| 1tka | N3T | Transketolase 1 | 2.2.1.1 | 0.445 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.445 | |
| 5ecc | NAP | Dehydrofolate reductase type I | / | 0.445 | |
| 1b5e | DCM | Deoxycytidylate 5-hydroxymethyltransferase | 2.1.2.8 | 0.444 | |
| 1tez | FAD | Deoxyribodipyrimidine photo-lyase | 4.1.99.3 | 0.444 | |
| 4hp8 | NAP | 2-deoxy-D-gluconate 3-dehydrogenase | / | 0.442 | |
| 4xnw | 2ID | P2Y purinoceptor 1 | / | 0.442 | |
| 1gpu | THD | Transketolase 1 | 2.2.1.1 | 0.441 | |
| 4fco | 0U4 | Beta-secretase 1 | 3.4.23.46 | 0.441 | |
| 1nzd | UPG | DNA beta-glucosyltransferase | / | 0.440 |