Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4zrnUPGUDP-glucose 4-epimerase, putative

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4zrnUPGUDP-glucose 4-epimerase, putative/1.000
1kvtUPGUDP-glucose 4-epimerase5.1.3.20.486
1ek6UPGUDP-glucose 4-epimerase/0.476
1udcUFMUDP-glucose 4-epimerase5.1.3.20.472
1i3mUD1UDP-glucose 4-epimerase/0.471
1i3nUD1UDP-glucose 4-epimerase/0.465
1sb9UPGWbpP/0.461
1lrlUPGUDP-glucose 4-epimerase5.1.3.20.447
1lrjUD1UDP-glucose 4-epimerase5.1.3.20.444
1i3kUPGUDP-glucose 4-epimerase/0.443