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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4x9nFADUncharacterized protein MG039 homolog

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4x9nFADUncharacterized protein MG039 homolog/1.000
3cgeFADCoenzyme A disulfide reductase/0.488
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.478
4aosFADSteroid monooxygenase/0.476
4tlxFDAKtzI/0.476
4tm4FDAKtzI/0.465
3up5FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.464
3axbFADPutative oxidoreductase/0.462
2yy7NADL-threonine dehydrogenase/0.456
3cgdFADCoenzyme A disulfide reductase/0.455
4tm0FADKtzI/0.454
4yjdFADD-amino-acid oxidase1.4.3.30.454
3uoxFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.451
3uozFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.450
3wmxNADNAD dependent epimerase/dehydratase/0.450
3f1kNAPUncharacterized oxidoreductase YciK10.449
4ntdFADThioredoxin reductase/0.449
4tlzFADKtzI/0.449
3lqfNADGalactitol dehydrogenase/0.448
2q0lFADThioredoxin reductase1.8.1.90.446
3iahNAPPutative oxoacyl-(Acyl carrier protein) reductase/0.446
3fpzAHZThiamine thiazole synthase/0.445
5dp2NAPCurF/0.445
2e48FADD-amino-acid oxidase1.4.3.30.444
3up4FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.444
2npxFADNADH peroxidase1.11.1.10.443
3vqrFADPutative oxidoreductase/0.443
3k4cFADPyranose 2-oxidase/0.442
4ap3FADSteroid monooxygenase/0.442
3dghFADThioredoxin reductase 1, mitochondrial1.8.1.90.441
1gesFADGlutathione reductase1.8.1.70.440
4b65FADL-ornithine N(5)-monooxygenase/0.440
4tm1FDAKtzI/0.440
5idwNAPShort-chain dehydrogenase/reductase SDR/0.440