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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4wx1FDAUDP-galactopyranose mutase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
4wx1FDAUDP-galactopyranose mutase/1.000
3utgFDAUDP-galactopyranose mutase/0.783
3uthFDAUDP-galactopyranose mutase/0.747
4u8kFDAUDP-galactopyranose mutase/0.720
3utfFDAUDP-galactopyranose mutase/0.636
4u8lFDAUDP-galactopyranose mutase/0.621
4u8pFDAUDP-galactopyranose mutase/0.620
4u8jFDAUDP-galactopyranose mutase/0.603
4gdeFDAUDP-galactopyranose mutase/0.602
4u8mFDAUDP-galactopyranose mutase/0.601
4u8oFDAUDP-galactopyranose mutase/0.597
3uklFADUDP-galactopyranose mutase/0.586
3ukkFDAUDP-galactopyranose mutase/0.579
5hhfFDAUDP-galactopyranose mutase/0.572
3ukkFADUDP-galactopyranose mutase/0.567
4u8nFDAUDP-galactopyranose mutase/0.563
3ukfFDAUDP-galactopyranose mutase/0.541
3ukaFADUDP-galactopyranose mutase/0.523
4dsgFADUncharacterized protein/0.512
4gddFADUDP-galactopyranose mutase/0.500
4dshFDAUncharacterized protein/0.496
4gdcFADUDP-galactopyranose mutase/0.491
3uteFADUDP-galactopyranose mutase/0.471