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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4o8jADNRNA 3'-terminal phosphate cyclase6.5.1.4

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4o8jADNRNA 3'-terminal phosphate cyclase6.5.1.41.000
3hnzPMN3-oxoacyl-[acyl-carrier-protein] synthase 22.3.1.1790.478
3fr5I4AFatty acid-binding protein, adipocyte/0.457
3juoAJDPhenazine biosynthesis protein A/B/0.457
4ba5PXGProbable aminotransferase/0.455
1jdtMTAPurine nucleoside phosphorylase/0.453
1x2hLPALipoate-protein ligase A6.3.1.200.453
3ogwIMNLactoperoxidase1.11.1.70.452
1vbiNADMalate/L-lactate dehydrogenase family protein/0.447
1touB1VFatty acid-binding protein, adipocyte/0.445
3p0fBAUUridine phosphorylase 22.4.2.30.445
4f5yC2EStimulator of interferon genes protein/0.445
1jdzFMBPurine nucleoside phosphorylase/0.442
1towCRZFatty acid-binding protein, adipocyte/0.442
3v0o4GWHisto-blood group ABO system transferase/0.440
4k36SAMAnaerobic sulfatase-maturating enzyme1.8.980.440