sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
2.200 Å
X-ray
2009-09-15
| Name: | Phenazine biosynthesis protein A/B |
|---|---|
| ID: | Q396C9_BURL3 |
| AC: | Q396C9 |
| Organism: | Burkholderia lata |
| Reign: | Bacteria |
| TaxID: | 482957 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 37.746 |
|---|---|
| Number of residues: | 30 |
| Including | |
| Standard Amino Acids: | 27 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 3 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.238 | 563.625 |
| % Hydrophobic | % Polar |
|---|---|
| 47.90 | 52.10 |
| According to VolSite | |
| HET Code: | AJD |
|---|---|
| Formula: | C12H15BrN2O2 |
| Molecular weight: | 299.164 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 62.29 % |
| Polar Surface area: | 68.77 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 3 |
| H-Bond Donors: | 2 |
| Rings: | 2 |
| Aromatic rings: | 1 |
| Anionic atoms: | 1 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| 43.5076 | -1.51959 | 92.6594 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| OAA | NE | ARG- 38 | 2.85 | 161.37 | H-Bond (Protein Donor) |
| OAA | CZ | ARG- 38 | 3.68 | 0 | Ionic (Protein Cationic) |
| OAB | CZ | ARG- 38 | 3.64 | 0 | Ionic (Protein Cationic) |
| OAA | CZ | ARG- 41 | 3.86 | 0 | Ionic (Protein Cationic) |
| BRAC | CB | HIS- 73 | 4.06 | 0 | Hydrophobic |
| BRAC | CB | ALA- 74 | 3.97 | 0 | Hydrophobic |
| CAF | CB | ALA- 74 | 4.33 | 0 | Hydrophobic |
| CAF | CB | SER- 77 | 3.76 | 0 | Hydrophobic |
| CAG | CE2 | PHE- 81 | 3.8 | 0 | Hydrophobic |
| CAI | CD1 | PHE- 81 | 3.79 | 0 | Hydrophobic |
| CAG | CE2 | TRP- 84 | 3.64 | 0 | Hydrophobic |
| CAG | CE2 | TYR- 120 | 4.15 | 0 | Hydrophobic |
| NAK | OE2 | GLU- 140 | 3.14 | 133.03 | H-Bond (Ligand Donor) |
| NAK | OE1 | GLU- 140 | 2.82 | 154.82 | H-Bond (Ligand Donor) |
| NAK | OE2 | GLU- 140 | 3.14 | 0 | Ionic (Ligand Cationic) |
| NAK | OE1 | GLU- 140 | 2.82 | 0 | Ionic (Ligand Cationic) |
